Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5862

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14230 and 14231 are separated by 210 nucleotides mRNA_5862: 14230 - K14998 SURF1, SHY1 surfeit locus 1 family protein, at 1,110,574 to 1,111,803 14230 mRNA_5863: 14231 - K09281 K09281 copper-fist transcription factor, at 1,112,014 to 1,113,676 14231

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,109,618 - +0.6
1,109,640 - +0.4
1,109,850 - +0.4
1,109,924 + -1.5
1,110,058 - -0.3
1,110,192 + -1.2
1,110,777 + 14230 mRNA_5862 0.17 -0.2
1,110,926 + 14230 mRNA_5862 0.29 +2.1
1,111,090 + 14230 mRNA_5862 0.42 +1.4
1,111,360 + 14230 mRNA_5862 0.64 -1.1
1,111,634 - 14230 mRNA_5862 0.86 +0.2
1,112,077 + -0.5
1,112,234 + 14231 mRNA_5863 0.13 +0.1
1,112,545 + 14231 mRNA_5863 0.32 -0.8

Or see this region's nucleotide sequence