Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5927

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14294 and 14295 are separated by 124 nucleotides14295 and 14296 are separated by 645 nucleotides mRNA_5926: 14294 - K02989 RP-S5e, RPS5 small subunit ribosomal protein S5e, at 1,255,116 to 1,256,595 14294 mRNA_5927: 14295 - K02979 RP-S28e, RPS28 small subunit ribosomal protein S28e, at 1,256,720 to 1,257,399 14295 mRNA_5928: 14296 - KOG3472 Predicted small membrane protein, at 1,258,045 to 1,258,837 14296

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,257,695 - -1.2
1,257,728 - -1.1
1,257,851 - +0.1
1,258,001 - -1.2
1,258,278 + 14296 mRNA_5928 0.29 -0.7
1,258,282 - 14296 mRNA_5928 0.30 +0.7

Or see this region's nucleotide sequence