Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5951

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14318 and 14319 are separated by 197 nucleotides14319 and 14320 are separated by 351 nucleotides mRNA_5950: 14318 - KOG2130 Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain, at 1,310,261 to 1,312,291 14318 mRNA_5951: 14319 - HMMPfam-Peptidase of plants and bacteria-PF04450, at 1,312,489 to 1,313,415 14319 mRNA_5952: 14320 - K15198 BDP1, TFC5 transcription factor TFIIIB component B'', at 1,313,767 to 1,316,568 14320

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,311,533 + 14318 mRNA_5950 0.63 -1.7
1,311,635 + 14318 mRNA_5950 0.68 +1.5
1,311,829 + 14318 mRNA_5950 0.77 +0.2
1,312,044 - 14318 mRNA_5950 0.88 -0.3
1,312,054 + 14318 mRNA_5950 0.88 +1.0
1,312,113 + +1.3
1,312,130 + +0.3
1,312,401 + +0.0
1,312,429 + +0.2
1,312,434 + -1.2
1,312,615 - 14319 mRNA_5951 0.14 +0.6
1,312,701 - 14319 mRNA_5951 0.23 -0.4
1,312,708 - 14319 mRNA_5951 0.24 -0.3
1,312,729 - 14319 mRNA_5951 0.26 -1.8
1,312,762 + 14319 mRNA_5951 0.29 +0.0
1,312,810 + 14319 mRNA_5951 0.35 +0.3
1,312,852 + 14319 mRNA_5951 0.39 +1.4
1,313,047 - 14319 mRNA_5951 0.60 -0.3
1,313,129 + 14319 mRNA_5951 0.69 -1.9
1,313,423 - +0.0
1,313,609 + +0.0
1,313,730 - -0.7

Or see this region's nucleotide sequence