Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5998

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14365 and 14366 are separated by 492 nucleotides14366 and 14367 are separated by 142 nucleotides mRNA_5997: 14365 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,412,411 to 1,414,490 14365 mRNA_5998: 14366 - Hypothetical Protein, at 1,414,983 to 1,417,635 14366 mRNA_5999: 14367 - KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily, at 1,417,778 to 1,422,818 14367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,414,205 - 14365 mRNA_5997 0.86 -0.7
1,414,219 - 14365 mRNA_5997 0.87 -2.1
1,414,278 + 14365 mRNA_5997 0.90 -1.1
1,414,519 - +0.8
1,414,803 - -0.8
1,414,854 + +2.0
1,414,862 - -0.0
1,414,969 - -1.0
1,415,241 - -0.8
1,415,285 - 14366 mRNA_5998 0.11 +0.0
1,415,334 + 14366 mRNA_5998 0.13 -0.1
1,415,355 - 14366 mRNA_5998 0.14 -0.5
1,415,450 + 14366 mRNA_5998 0.18 -0.7
1,415,536 + 14366 mRNA_5998 0.21 +0.0
1,415,645 + 14366 mRNA_5998 0.25 -0.3
1,415,680 - 14366 mRNA_5998 0.26 -0.7
1,415,714 + 14366 mRNA_5998 0.28 +0.6
1,415,728 - 14366 mRNA_5998 0.28 +0.0
1,415,758 + 14366 mRNA_5998 0.29 -1.1
1,415,944 + 14366 mRNA_5998 0.36 +0.0
1,415,993 - 14366 mRNA_5998 0.38 -0.2
1,416,164 + 14366 mRNA_5998 0.45 +0.8
1,416,296 - 14366 mRNA_5998 0.49 +0.6
1,416,426 + 14366 mRNA_5998 0.54 -0.7
1,416,749 + 14366 mRNA_5998 0.67 -0.3
1,417,182 + 14366 mRNA_5998 0.83 -0.1
1,417,298 + 14366 mRNA_5998 0.87 -0.1
1,417,313 - 14366 mRNA_5998 0.88 +0.2
1,417,436 - +0.9
1,417,442 - -1.0
1,417,454 + -0.6
1,417,582 + +0.0
1,417,591 + +0.2
1,417,618 + -0.2
1,417,647 - +0.4
1,417,721 + +0.7
1,417,724 - +0.6
1,417,754 + -0.4

Or see this region's nucleotide sequence