Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6003

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14370 and 14371 are separated by 432 nucleotides14371 and 14372 are separated by 178 nucleotides mRNA_6002: 14370 - KOG4178 Soluble epoxide hydrolase, at 1,428,080 to 1,429,229 14370 mRNA_6003: 14371 - K14792 RRP5, PDCD11 rRNA biogenesis protein RRP5, at 1,429,662 to 1,434,924 14371 mRNA_6004: 14372 - SUPERFAMILY--SSF52047, at 1,435,103 to 1,436,492 14372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,428,716 - 14370 mRNA_6002 0.55 -1.1
1,428,854 - 14370 mRNA_6002 0.67 +0.4
1,428,905 + 14370 mRNA_6002 0.72 +1.1
1,429,017 - 14370 mRNA_6002 0.81 +0.1
1,429,158 + -0.7
1,429,294 - -0.9
1,429,295 + +0.2
1,429,307 - +0.1
1,429,307 - +0.6
1,429,313 - -0.7
1,429,324 + -0.1
1,429,330 - +0.5
1,429,379 - -0.6
1,429,383 + -1.9
1,429,447 - -0.5
1,429,453 + -1.0
1,429,461 + +0.7
1,429,463 - -0.5
1,429,468 + -1.1
1,429,580 - +0.4
1,429,584 + -1.3
1,435,019 - -1.3
1,435,074 - -0.6
1,435,378 + 14372 mRNA_6004 0.20 +0.1
1,435,523 + 14372 mRNA_6004 0.30 -2.3
1,435,556 - 14372 mRNA_6004 0.33 +1.7

Or see this region's nucleotide sequence