Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6116

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14483 and 14484 are separated by 400 nucleotides14484 and 14485 are separated by 603 nucleotides mRNA_6115: 14483 - Hypothetical Protein, at 26,459 to 27,455 14483 mRNA_6116: 14484 - Hypothetical Protein, at 27,856 to 28,790 14484 mRNA_6117: 14485 - BLAST expressed protein [Schizophyllum commune H4-8], at 29,394 to 30,967 14485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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26,865 + 14483 mRNA_6115 0.41 +0.4
26,871 - 14483 mRNA_6115 0.41 -1.0
26,872 + 14483 mRNA_6115 0.41 -0.5
26,877 - 14483 mRNA_6115 0.42 +0.6
26,898 + 14483 mRNA_6115 0.44 -1.3
26,996 - 14483 mRNA_6115 0.54 -0.8
27,001 - 14483 mRNA_6115 0.54 -0.0
27,004 - 14483 mRNA_6115 0.55 -2.5
27,009 - 14483 mRNA_6115 0.55 -0.3
27,058 - 14483 mRNA_6115 0.60 +1.3
27,134 - 14483 mRNA_6115 0.68 -2.0
27,139 - 14483 mRNA_6115 0.68 -0.5
27,163 - 14483 mRNA_6115 0.71 -0.4
27,219 + 14483 mRNA_6115 0.76 +2.2
27,341 - 14483 mRNA_6115 0.88 +0.5
27,346 + 14483 mRNA_6115 0.89 +0.9
27,377 + -1.3
27,381 + -0.6
27,511 + -1.6
27,735 - -0.2
27,934 - -0.7
28,046 - 14484 mRNA_6116 0.20 +0.5
28,058 - 14484 mRNA_6116 0.22 -1.6
28,064 + 14484 mRNA_6116 0.22 -1.1
28,217 + 14484 mRNA_6116 0.39 -0.2
28,231 + 14484 mRNA_6116 0.40 -0.4
28,250 + 14484 mRNA_6116 0.42 +0.3
28,481 + 14484 mRNA_6116 0.67 -0.3
28,671 - 14484 mRNA_6116 0.87 +2.5
28,724 + -0.2
28,965 + -0.1
29,023 - +0.5
29,091 + +0.1
29,123 - -1.4
29,142 + +0.0
29,394 - -0.2
29,527 - -1.2
29,785 - 14485 mRNA_6117 0.25 -1.1

Or see this region's nucleotide sequence