Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6181

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14548 and 14549 are separated by 456 nucleotides14549 and 14550 are separated by 796 nucleotides mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188,869 to 192,529 14548 mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192,986 to 195,356 14549 mRNA_6182: 14550 - K06665 SSN6 glucose repression mediator protein, at 196,153 to 199,901 14550

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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192,222 + +0.2
192,240 + +1.3
192,371 - +0.7
192,516 - -0.3
192,683 + -0.0
192,705 + -0.8
192,706 - +0.0
192,707 + +0.0
193,068 - +2.1
195,417 + -0.8
195,565 - +1.7
195,600 - -1.6
195,624 + +0.1
195,736 - -1.3
195,738 + -0.8
195,742 + -0.8
195,744 + +0.5
195,746 + +0.7
195,756 + -0.8
195,757 - -0.5
195,757 + +0.3
195,768 - -0.4
195,773 + +0.5
195,780 + +0.0
195,908 - -1.4
196,044 - -0.2
196,055 - -0.5
196,056 + +0.4
196,113 + +0.1
196,151 + -0.6

Or see this region's nucleotide sequence