Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6224

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14591 and 14592 are separated by 961 nucleotides14592 and 14593 are separated by 36 nucleotides mRNA_6223: 14591 - BLAST acetyl-coenzyme A synthetase [Rhizoctonia solani AG-1..., at 288,357 to 288,729 14591 mRNA_6224: 14592 - Hypothetical Protein, at 289,691 to 292,264 14592 mRNA_6225: 14593 - Hypothetical Protein, at 292,301 to 294,618 14593

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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288,693 - -0.7
288,704 + +0.3
288,707 + -0.0
288,715 + +1.1
288,717 + -0.2
288,718 - +0.6
288,997 + -0.4
289,024 - +0.4
289,173 + -1.6
289,429 + -0.9
289,447 + -0.5
289,909 + -0.8
291,883 + 14592 mRNA_6224 0.85 +0.2
293,232 + 14593 mRNA_6225 0.40 +1.5
293,237 + 14593 mRNA_6225 0.40 +0.9
293,239 + 14593 mRNA_6225 0.40 -0.6

Or see this region's nucleotide sequence