Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6251

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14618 and 14619 are separated by 395 nucleotides14619 and 14620 are separated by 55 nucleotides mRNA_6250: 14618 - Hypothetical Protein, at 355,476 to 357,206 14618 mRNA_6251: 14619 - KOG4188 Uncharacterized conserved protein, at 357,602 to 358,776 14619 mRNA_6252: 14620 - K10845 TTDA, GTF2H5, TFB5 TFIIH basal transcription factor complex TTD-A subunit, at 358,832 to 359,230 14620

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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356,748 - 14618 mRNA_6250 0.73 -1.1
357,041 + +0.5
357,080 - +0.2
357,206 + +0.2
357,206 + -0.7
357,775 + 14619 mRNA_6251 0.15 -0.4
357,915 + 14619 mRNA_6251 0.27 -0.3
358,507 + 14619 mRNA_6251 0.77 -0.4
358,679 - +0.1
358,826 - -1.7
359,280 + +0.4
359,321 + -0.0
359,321 + -0.6
359,436 + +0.0
359,550 - -1.1
359,692 + -1.2
359,692 - +1.4

Or see this region's nucleotide sequence