Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6253

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14621 and 14622 are separated by 401 nucleotides mRNA_6253: 14621 - HMMPfam-FR47-like protein-PF08445,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 360,247 to 361,370 14621 mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361,772 to 365,441 14622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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359,280 + +0.4
359,321 + -0.0
359,321 + -0.6
359,436 + +0.0
359,550 - -1.1
359,692 + -1.2
359,692 - +1.4
359,866 - -0.1
359,892 + -0.3
359,964 + +1.0
360,019 - +1.3
360,032 - -0.4
360,291 + -1.0
360,442 - 14621 mRNA_6253 0.17 +0.1
360,549 + 14621 mRNA_6253 0.27 +0.4
360,556 + 14621 mRNA_6253 0.27 -0.3
360,611 + 14621 mRNA_6253 0.32 -0.4
361,459 - -0.4
361,467 + +0.4
361,475 + +0.1
361,606 - +0.7
361,606 - +0.2
361,647 + +1.0
361,753 - -0.7
361,896 + -0.6
362,056 + -0.7
362,188 + 14622 mRNA_6254 0.11 +0.0
362,343 - 14622 mRNA_6254 0.16 -0.3
362,344 + 14622 mRNA_6254 0.16 +0.2

Or see this region's nucleotide sequence