Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6284

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14651 and 14652 are separated by 141 nucleotides14652 and 14653 are separated by 185 nucleotides mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438,750 to 440,581 14651 mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440,723 to 442,428 14652 mRNA_6285: 14653 - K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5, at 442,614 to 443,927 14653

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
440,318 + 14651 mRNA_6283 0.86 +0.1
440,324 + 14651 mRNA_6283 0.86 -0.9
440,325 + 14651 mRNA_6283 0.86 +0.4
440,331 + 14651 mRNA_6283 0.86 -0.7
440,332 + 14651 mRNA_6283 0.86 -1.3
440,334 + 14651 mRNA_6283 0.86 -0.2
440,335 - 14651 mRNA_6283 0.87 -0.4
440,336 - 14651 mRNA_6283 0.87 +0.4
440,628 - +0.6
440,629 - -0.1
440,630 + -1.0
440,633 - +0.0
440,641 - +0.6
440,646 + +0.5
440,796 - -0.7
441,382 - 14652 mRNA_6284 0.39 +0.2
441,402 + 14652 mRNA_6284 0.40 -1.0
441,517 - 14652 mRNA_6284 0.47 -0.2
441,851 + 14652 mRNA_6284 0.66 -0.6
441,966 + 14652 mRNA_6284 0.73 +0.5
441,970 + 14652 mRNA_6284 0.73 -0.2
442,014 + 14652 mRNA_6284 0.76 -1.6
442,155 - 14652 mRNA_6284 0.84 -0.6
442,261 + +2.4
442,388 + -0.4
442,407 + +0.6
442,428 - -0.2
442,428 + -0.1
442,431 - +0.1
442,576 + -2.0
442,714 + -0.5
443,144 - 14653 mRNA_6285 0.40 +0.2

Or see this region's nucleotide sequence