Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6323

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14690 and 14691 are separated by 593 nucleotides14691 and 14692 are separated by 662 nucleotides mRNA_6322: 14690 - K09420 MYB myb proto-oncogene protein, at 544,392 to 544,811 14690 mRNA_6323: 14691 - Hypothetical Protein, at 545,405 to 548,741 14691 mRNA_6324: 14692 - Hypothetical Protein, at 549,404 to 551,693 14692

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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544,595 + 14690 mRNA_6322 0.48 -0.5
544,599 + 14690 mRNA_6322 0.49 -0.2
544,605 + 14690 mRNA_6322 0.51 +0.9
544,611 - 14690 mRNA_6322 0.52 +0.2
544,619 + 14690 mRNA_6322 0.54 +0.6
544,751 + 14690 mRNA_6322 0.85 -0.7
544,760 - 14690 mRNA_6322 0.88 -0.3
544,814 - -0.2
544,877 - +0.2
544,890 - -0.2
545,170 - -0.4
545,291 + -0.4
545,306 + +0.3
545,316 - -0.4
545,316 + +0.4
545,316 - -0.3
545,328 + +0.4
545,378 - +0.3
545,465 - -1.0
545,466 - -0.5
545,466 - -0.5
545,608 - -1.3
545,848 - 14691 mRNA_6323 0.13 -0.1
545,949 + 14691 mRNA_6323 0.16 -0.8
545,974 - 14691 mRNA_6323 0.17 -0.7
546,205 - 14691 mRNA_6323 0.24 -1.1
546,732 + 14691 mRNA_6323 0.40 -1.7
547,097 - 14691 mRNA_6323 0.51 +0.1
547,362 + 14691 mRNA_6323 0.59 +0.1
547,536 - 14691 mRNA_6323 0.64 -2.9
547,814 - 14691 mRNA_6323 0.72 -0.3
547,940 + 14691 mRNA_6323 0.76 -0.5
548,274 - 14691 mRNA_6323 0.86 -1.9
548,537 - +0.4
548,699 + +0.0
548,856 + -1.0
548,988 + -0.9
548,998 - +0.2
549,140 - +0.4
549,147 - -0.2
549,149 - +0.3
549,149 - +1.4
549,235 + +1.0
549,271 + -0.2
549,280 + -0.2
549,288 + -0.5
549,292 + +0.3
549,296 - -0.8
549,300 + -1.4
549,310 - +0.4
549,312 - -1.2
549,314 + -0.6
549,318 - +0.3
549,318 + +0.4
549,319 - -0.3
549,320 + +0.3
549,324 - -0.0
549,402 - -0.7
549,443 - +0.4
549,451 + -0.7
549,455 + -1.0
549,479 - -0.3
549,533 - -0.2
549,555 - -0.5
549,581 + -1.2
549,647 + 14692 mRNA_6324 0.11 +0.5
549,708 - 14692 mRNA_6324 0.13 -0.6

Or see this region's nucleotide sequence