Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6341

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14708 and 14709 are separated by 260 nucleotides14709 and 14710 are separated by 257 nucleotides mRNA_6340: 14708 - BLAST tryptophan--tRNA ligase [Puccinia sorghi], at 586,004 to 586,792 14708 mRNA_6341: 14709 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 587,053 to 588,639 14709 mRNA_6342: 14710 - KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins, at 588,897 to 590,459 14710

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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586,129 - 14708 mRNA_6340 0.16 +0.3
586,275 - 14708 mRNA_6340 0.34 -0.6
588,725 - -0.5
589,037 - -0.6
589,148 - 14710 mRNA_6342 0.16 -0.1
589,148 + 14710 mRNA_6342 0.16 +0.2
589,461 + 14710 mRNA_6342 0.36 -0.1
589,579 + 14710 mRNA_6342 0.44 +0.7

Or see this region's nucleotide sequence