Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6366

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14733 and 14734 are separated by 407 nucleotides14734 and 14735 are separated by 743 nucleotides mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645,356 to 646,894 14733 mRNA_6366: 14734 - BLAST putative membrane permease [Rhizoctonia solani 123E], at 647,302 to 648,659 14734 mRNA_6367: 14735 - Hypothetical Protein, at 649,403 to 649,822 14735

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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646,492 - 14733 mRNA_6365 0.74 -1.8
646,496 - 14733 mRNA_6365 0.74 -1.0
646,776 + -1.9
646,943 - -0.5
646,956 - +0.1
647,048 - -0.4
647,080 - -1.5
647,124 - -0.3
647,129 - -0.2
647,133 + -0.6
647,175 - +1.4
647,200 + -0.2
647,203 - +0.1
647,218 + -0.4
647,220 + +0.2
647,230 - -0.8
647,230 + -2.2
647,233 + +0.2
647,246 + -0.4
647,358 - -0.1
647,361 + +0.2
647,366 + -0.3
647,376 + +0.6
647,397 - -0.2
647,415 + -1.8
647,513 + 14734 mRNA_6366 0.16 +1.2
647,518 - 14734 mRNA_6366 0.16 -0.8
647,534 + 14734 mRNA_6366 0.17 -0.2
647,538 + 14734 mRNA_6366 0.17 -1.1
647,550 + 14734 mRNA_6366 0.18 +0.3
647,550 + 14734 mRNA_6366 0.18 -0.7
647,660 - 14734 mRNA_6366 0.26 +0.9
647,859 - 14734 mRNA_6366 0.41 +1.4
647,957 + 14734 mRNA_6366 0.48 -0.7
648,663 + -0.5
648,711 + -0.4
648,853 - -0.6
648,937 - +0.4
648,967 - -0.3
649,117 + -1.5
649,120 - -0.6
649,132 + -0.3
649,135 - +0.8

Or see this region's nucleotide sequence