Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6378

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14746 and 14747 are separated by 780 nucleotides mRNA_6378: 14746 - K11884 PNO1, DIM2 RNA-binding protein PNO1, at 675,035 to 675,906 14746 mRNA_6379: 14747 - Hypothetical Protein, at 676,687 to 677,946 14747

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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674,051 - +0.0
674,062 + +0.6
674,062 - -0.1
674,063 + +0.4
674,064 + +0.3
674,065 + -0.3
674,073 - -1.0
674,075 + -0.2
674,075 + -0.5
674,076 - -2.5
674,081 + -0.0
674,081 + +0.3
674,082 - +1.0
674,089 + -0.3
674,096 + +1.8
674,097 + -0.4
674,097 + -1.4
674,108 + +0.5
674,113 - -1.3
674,131 + -0.5
674,135 + -0.5
674,202 - -0.5
674,254 - -0.7
674,271 - -0.2
674,279 - -2.2
674,429 - +0.3
674,583 + +0.4
676,331 + +0.2
676,426 - -0.1
676,436 - +1.2
676,438 - -0.7
676,439 + -0.2
676,443 + -0.6
676,455 + -0.8
676,457 - -0.8
676,463 + -0.1
676,496 - -1.1
676,516 + -0.1
676,596 - -0.5
676,876 - 14747 mRNA_6379 0.15 +1.3

Or see this region's nucleotide sequence