Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6381

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14748 and 14749 are separated by 202 nucleotides14749 and 14750 are separated by 581 nucleotides mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678,421 to 679,401 14748 mRNA_6381: 14749 - Interpro F-box-like, at 679,604 to 681,699 14749 mRNA_6382: 14750 - Hypothetical Protein, at 682,281 to 684,206 14750

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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678,638 - 14748 mRNA_6380 0.22 -0.7
678,649 - 14748 mRNA_6380 0.23 -0.2
678,675 - 14748 mRNA_6380 0.26 -0.3
678,955 + 14748 mRNA_6380 0.54 +0.2
679,249 + 14748 mRNA_6380 0.84 -1.3
679,370 - -0.2
679,439 + -0.9
679,527 - -0.2
679,572 - -0.3
679,980 + 14749 mRNA_6381 0.18 -0.9
680,227 - 14749 mRNA_6381 0.30 +1.8
680,228 + 14749 mRNA_6381 0.30 -0.1
680,247 + 14749 mRNA_6381 0.31 +0.1
680,531 - 14749 mRNA_6381 0.44 +0.7
680,532 + 14749 mRNA_6381 0.44 +0.3
680,585 - 14749 mRNA_6381 0.47 +0.5
680,688 - 14749 mRNA_6381 0.52 -0.4
680,707 + 14749 mRNA_6381 0.53 +1.3
681,255 + 14749 mRNA_6381 0.79 +0.3
681,671 + +0.5
681,682 - +0.5
681,702 - +0.3
681,727 + +0.6
681,736 + -1.4
681,760 + -0.1
681,858 - +1.6
681,873 - -1.1
681,874 + -1.1
681,881 + -0.5
681,890 - +0.4
681,892 - -1.5
681,896 - +1.1
681,903 + +0.2
681,905 + +0.6
681,927 - -0.3
681,939 - +1.5
682,015 - -0.3
682,021 + -0.6
682,093 + +0.2
682,093 - -0.4
682,096 + +1.7
682,112 + -0.2
682,365 - +1.3
682,650 - 14750 mRNA_6382 0.19 +0.1

Or see this region's nucleotide sequence