Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6550

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14917 and 14918 are separated by 69 nucleotides mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1,062,959 to 1,066,157 14917 mRNA_6550: 14918 - K11374 ELP2 elongator complex protein 2, at 1,066,227 to 1,069,568 14918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,065,277 - 14917 mRNA_6549 0.72 -0.8
1,065,346 + 14917 mRNA_6549 0.75 -0.5
1,065,373 + 14917 mRNA_6549 0.75 -0.9
1,065,405 - 14917 mRNA_6549 0.76 -0.4
1,065,498 - 14917 mRNA_6549 0.79 +1.5
1,065,529 + 14917 mRNA_6549 0.80 -0.7
1,065,622 + 14917 mRNA_6549 0.83 -0.5
1,065,672 + 14917 mRNA_6549 0.85 -0.1
1,065,824 + 14917 mRNA_6549 0.90 -0.9
1,066,065 + -1.1
1,066,076 - +0.6
1,066,131 + -0.2
1,066,303 - +0.2
1,067,701 - 14918 mRNA_6550 0.44 +0.2
1,068,689 - 14918 mRNA_6550 0.74 +0.0
1,068,781 - 14918 mRNA_6550 0.76 +1.7
1,068,990 + 14918 mRNA_6550 0.83 +0.7
1,069,133 - 14918 mRNA_6550 0.87 -1.1
1,069,141 - 14918 mRNA_6550 0.87 +0.8
1,069,423 - +0.6
1,069,499 - +0.0
1,069,545 - +2.6
1,069,568 - -0.5
1,069,590 - +1.5
1,069,594 + +0.6
1,069,602 - +0.2
1,069,635 - -1.7
1,069,723 + -0.1
1,069,738 + -0.8
1,069,760 + -0.4
1,069,862 + -0.4
1,069,863 + +0.0
1,069,884 - +1.3
1,069,907 - +0.3
1,069,967 + -1.1
1,069,980 + -1.0
1,069,981 - -0.6
1,070,077 + -0.8
1,070,130 - -0.8
1,070,245 + +0.7
1,070,257 + -2.0
1,070,271 - -0.9
1,070,397 + +0.5

Or see this region's nucleotide sequence