Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6615

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14982 and 14983 are separated by 89 nucleotides14983 and 14984 are separated by 320 nucleotides mRNA_6614: 14982 - HMMPfam-MRC1-like domain-PF09444, at 1,249,488 to 1,254,442 14982 mRNA_6615: 14983 - Hypothetical Protein, at 1,254,532 to 1,256,049 14983 mRNA_6616: 14984 - Hypothetical Protein, at 1,256,370 to 1,257,792 14984

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,254,438 - +2.1
1,254,534 + +0.6
1,254,834 - 14983 mRNA_6615 0.20 +1.0
1,254,948 - 14983 mRNA_6615 0.27 -0.5
1,254,965 - 14983 mRNA_6615 0.29 -1.0
1,254,971 + 14983 mRNA_6615 0.29 -0.9
1,255,219 - 14983 mRNA_6615 0.45 -0.5
1,255,435 - 14983 mRNA_6615 0.59 +0.9
1,255,833 + 14983 mRNA_6615 0.86 -0.5
1,255,987 - +0.8
1,255,987 - -1.3
1,255,988 + +0.1
1,256,018 - -0.1
1,256,170 - -0.5
1,256,177 + -1.2
1,256,186 + -0.0
1,256,191 + +0.9
1,256,347 - -0.3
1,256,354 + -0.1
1,256,622 - 14984 mRNA_6616 0.18 -0.5
1,256,677 + 14984 mRNA_6616 0.22 -0.6
1,256,793 - 14984 mRNA_6616 0.30 +0.2

Or see this region's nucleotide sequence