Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6644

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15011 and 15012 are separated by 408 nucleotides mRNA_6643: 15011 - KOG2983 Uncharacterized conserved protein, at 1,330,275 to 1,331,625 15011 mRNA_6644: 15012 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1,332,034 to 1,334,144 15012

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,331,731 - +1.0
1,331,741 + +1.5
1,331,744 + -0.3
1,331,752 + -0.7
1,331,780 + -0.1
1,331,919 + +0.4
1,331,920 - -0.0
1,331,924 - +1.0
1,331,934 - +0.3
1,331,940 + +0.3
1,331,940 + -0.3
1,331,942 + -0.6
1,331,954 - -0.1
1,331,961 - -0.1
1,331,965 - -1.1
1,331,965 - -1.3
1,331,966 - +0.0
1,331,967 + -0.7
1,332,093 + +0.0
1,332,128 + -0.9
1,332,242 + -1.6
1,332,279 - 15012 mRNA_6644 0.12 +0.3
1,332,290 - 15012 mRNA_6644 0.12 +0.1
1,332,384 - 15012 mRNA_6644 0.17 -1.2
1,332,411 - 15012 mRNA_6644 0.18 -0.2
1,332,583 + 15012 mRNA_6644 0.26 +1.0
1,333,261 - 15012 mRNA_6644 0.58 -0.1
1,333,543 - 15012 mRNA_6644 0.71 -0.1
1,333,612 + 15012 mRNA_6644 0.75 -0.9
1,333,748 - 15012 mRNA_6644 0.81 -1.2
1,334,034 - -0.3
1,334,140 - +0.8
1,334,294 - -0.8
1,334,324 - +1.4
1,334,356 + -1.6
1,334,369 + -0.1
1,334,392 + +1.7
1,334,435 + +0.6
1,334,438 - -0.5
1,334,447 - +0.5
1,334,464 + -0.2
1,334,464 + -1.9
1,334,467 - +0.4
1,334,495 - +0.2
1,334,496 - -0.2
1,334,499 - +0.8
1,334,503 + -0.4
1,334,508 - -0.1
1,334,510 - +0.6
1,334,516 + -0.1
1,334,523 - +1.3
1,334,527 - +1.4
1,334,529 - +0.5
1,334,529 + -0.6
1,334,544 + -0.8
1,334,552 + -0.5
1,334,553 + -0.4
1,334,556 - -0.8
1,334,573 - +1.7
1,334,574 + -0.4
1,334,574 + +0.4
1,334,579 - -0.1
1,334,585 - +0.1
1,334,588 + -1.8
1,334,590 - +0.2
1,334,592 + +0.1
1,334,593 - +0.6
1,334,612 + +0.4
1,334,614 - +1.0
1,334,615 - -1.8
1,334,623 + -1.4
1,334,623 - -0.3
1,334,654 - -0.3
1,334,655 - -0.3
1,334,672 - +0.2
1,334,676 - +0.9
1,334,681 - -0.5
1,334,687 - +0.1
1,334,690 - -1.7
1,334,691 + -0.4
1,334,700 + -0.7
1,334,701 - -0.1
1,334,702 + -0.1
1,334,712 - -2.0
1,334,712 - -0.2
1,334,714 - +1.1
1,334,726 - -1.5
1,334,731 - -1.1
1,334,757 - +0.0
1,334,760 - -0.2
1,334,764 + -0.0
1,334,773 + -0.7
1,334,784 + -1.8
1,334,792 + -0.4
1,334,820 + -0.4
1,334,822 - +0.6
1,334,827 + +1.0
1,334,838 + -1.7
1,334,856 - +0.1
1,334,875 + -0.9
1,334,882 - +0.3
1,334,885 - -0.4
1,334,898 - -0.4
1,334,915 - -0.4
1,334,915 + +0.4
1,334,920 + +0.4
1,334,924 + +0.2
1,334,932 - -0.5
1,334,959 - +0.6
1,334,961 + -0.8
1,334,974 - +1.8
1,334,975 - -0.6
1,334,976 + +0.3
1,334,976 - +0.2
1,334,981 - -0.2
1,334,989 - -1.7
1,334,993 - +0.5
1,334,996 + -0.2
1,334,996 + +0.1
1,335,007 + -0.4
1,335,008 - -1.5
1,335,012 + -0.3
1,335,014 + +0.1
1,335,015 + +1.3
1,335,018 + +0.8
1,335,019 - -0.1
1,335,026 + -0.2
1,335,030 + -0.6
1,335,030 - -1.0
1,335,033 + -0.4
1,335,036 + -0.0
1,335,047 - +0.3
1,335,066 + +1.4
1,335,103 + +0.2
1,335,103 + +0.2
1,335,107 + -0.3
1,335,114 + +0.3
1,335,114 + +0.1
1,335,114 + +1.0
1,335,119 - +0.3
1,335,127 - -1.2
1,335,134 - -0.3

Or see this region's nucleotide sequence