Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6711

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15078 and 15079 are separated by 550 nucleotides mRNA_6710: 15078 - SUPERFAMILY--SSF50685, at 1,510,573 to 1,512,987 15078 mRNA_6711: 15079 - Hypothetical Protein, at 1,513,538 to 1,514,008 15079

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,512,993 - -0.1
1,513,266 + +0.7
1,513,285 - -1.8
1,513,396 + +1.4
1,513,451 - +1.5
1,513,454 + -0.5
1,513,455 + -0.0
1,513,557 + -0.1
1,513,567 - +1.1
1,513,723 + 15079 mRNA_6711 0.39 -0.9
1,513,745 - 15079 mRNA_6711 0.44 +0.1
1,513,768 + 15079 mRNA_6711 0.49 +0.7
1,513,895 - 15079 mRNA_6711 0.76 -0.7
1,514,317 + -0.5
1,514,319 + +1.5
1,514,348 + +0.3
1,514,348 + +0.3
1,514,363 - -0.5
1,514,364 + +1.4
1,514,365 + +0.2
1,514,368 - -0.8
1,514,460 + -0.0
1,514,463 - -0.1
1,514,471 - +0.5
1,514,473 - -0.5
1,514,475 + -0.2
1,514,477 + +0.7
1,514,486 - -0.1
1,514,488 + +1.0
1,514,490 - +0.4
1,514,490 - +0.7
1,514,499 + -1.0
1,514,501 + -0.7
1,514,506 + +0.4
1,514,583 + -0.1
1,514,592 - +0.0
1,514,616 - -0.3
1,514,617 + +0.3
1,514,638 - +1.4
1,514,642 + +1.1
1,514,649 + +0.5
1,514,650 - -1.1
1,514,653 + +1.0
1,514,673 + -0.7
1,514,677 - +0.3
1,514,697 - -0.3
1,514,699 + -0.9
1,514,729 - -1.1
1,514,771 - -0.3
1,514,772 - +0.3
1,514,779 - +0.2
1,514,781 + +1.1
1,514,783 - -0.5
1,514,783 - -0.1
1,514,785 + -0.3
1,514,786 + +0.0
1,514,788 + -0.2
1,514,793 - +2.1
1,514,810 - +0.2
1,514,811 - -0.6
1,514,812 - +0.1
1,514,821 + +0.5
1,514,952 + -0.3

Or see this region's nucleotide sequence