Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6719

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15086 and 15087 are separated by 994 nucleotides15087 and 15088 are separated by 759 nucleotides mRNA_6718: 15086 - K13711 PI4K2 phosphatidylinositol 4-kinase type 2, at 1,526,282 to 1,529,015 15086 mRNA_6719: 15087 - Hypothetical Protein, at 1,530,010 to 1,530,905 15087 mRNA_6720: 15088 - K11293 HIRA, HIR1 protein HIRA/HIR1, at 1,531,665 to 1,535,330 15088

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,529,086 - -1.3
1,529,114 + -1.8
1,529,168 + +0.5
1,529,201 - -1.1
1,529,270 + -1.8
1,529,273 + -0.1
1,529,794 + -0.3
1,529,796 - +0.3
1,530,119 - 15087 mRNA_6719 0.12 +0.9
1,530,412 + 15087 mRNA_6719 0.45 -0.4
1,530,512 - 15087 mRNA_6719 0.56 -0.2
1,530,538 + 15087 mRNA_6719 0.59 +0.3
1,530,640 - 15087 mRNA_6719 0.70 +0.6
1,530,709 - 15087 mRNA_6719 0.78 +0.4
1,530,975 - -0.5
1,530,994 + -0.2
1,530,998 - -1.3
1,531,080 - -1.4
1,531,126 + -0.8
1,531,150 + +1.7
1,531,158 + -2.0
1,531,163 - +0.6
1,531,237 + -0.7
1,531,285 + -1.0
1,531,293 - +0.4
1,531,304 + -0.2
1,531,305 - +0.5
1,531,308 + -1.1
1,531,309 - -0.8
1,531,309 - +1.1
1,531,420 + +0.3
1,531,422 - -0.6
1,531,423 + -1.8
1,531,449 - -0.4
1,531,460 - +0.1
1,531,460 + -0.6
1,531,466 + -0.9
1,531,466 + -0.0
1,531,466 + -1.4
1,531,466 + +0.9
1,531,484 + -0.5
1,531,581 - -1.1
1,531,582 + -0.9

Or see this region's nucleotide sequence