Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6724

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15091 and 15092 are separated by 92 nucleotides mRNA_6723: 15091 - K01078 E3.1.3.2 acid phosphatase, at 1,542,029 to 1,544,062 15091 mRNA_6724: 15092 - HMMPfam-Voltage-dependent anion channel-PF03595, at 1,544,155 to 1,546,536 15092

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,543,197 + 15091 mRNA_6723 0.57 -0.7
1,543,279 - 15091 mRNA_6723 0.61 +0.0
1,543,307 - 15091 mRNA_6723 0.63 +1.7
1,543,366 + 15091 mRNA_6723 0.66 -0.3
1,543,368 + 15091 mRNA_6723 0.66 -0.4
1,543,540 + 15091 mRNA_6723 0.74 -0.0
1,543,549 - 15091 mRNA_6723 0.75 -0.7
1,543,567 - 15091 mRNA_6723 0.76 -0.1
1,543,689 - 15091 mRNA_6723 0.82 -0.4
1,543,740 - 15091 mRNA_6723 0.84 -0.9
1,543,741 - 15091 mRNA_6723 0.84 +1.6
1,543,935 - +0.2
1,544,021 - +0.5
1,544,173 - -0.6
1,544,191 - +0.1
1,544,199 + -0.4
1,544,246 - -0.7
1,544,298 - -1.0
1,544,307 - +0.6
1,544,311 - -0.5
1,544,314 - +0.2
1,544,329 - +0.1
1,544,361 - -0.2
1,544,418 + 15092 mRNA_6724 0.11 +1.4
1,544,421 - 15092 mRNA_6724 0.11 +0.5
1,544,427 + 15092 mRNA_6724 0.11 +0.1
1,544,439 - 15092 mRNA_6724 0.12 +0.1
1,544,454 - 15092 mRNA_6724 0.13 -2.2
1,544,468 - 15092 mRNA_6724 0.13 +1.1
1,544,488 - 15092 mRNA_6724 0.14 +1.6
1,544,493 + 15092 mRNA_6724 0.14 +0.9
1,544,498 - 15092 mRNA_6724 0.14 +0.7
1,544,584 - 15092 mRNA_6724 0.18 +2.9
1,544,685 + 15092 mRNA_6724 0.22 -0.3
1,544,689 - 15092 mRNA_6724 0.22 +1.1
1,544,696 - 15092 mRNA_6724 0.23 -0.7
1,544,836 - 15092 mRNA_6724 0.29 -0.5
1,544,852 - 15092 mRNA_6724 0.29 +0.6
1,544,889 + 15092 mRNA_6724 0.31 -0.0
1,544,893 - 15092 mRNA_6724 0.31 +0.1
1,544,919 + 15092 mRNA_6724 0.32 +0.5
1,544,924 - 15092 mRNA_6724 0.32 -0.7
1,544,986 - 15092 mRNA_6724 0.35 -0.8
1,545,057 - 15092 mRNA_6724 0.38 +1.4
1,545,069 + 15092 mRNA_6724 0.38 +0.8
1,545,069 - 15092 mRNA_6724 0.38 +0.2
1,545,076 - 15092 mRNA_6724 0.39 -2.6
1,545,160 - 15092 mRNA_6724 0.42 -1.4
1,545,169 - 15092 mRNA_6724 0.43 -1.5
1,545,169 - 15092 mRNA_6724 0.43 +0.7
1,545,253 - 15092 mRNA_6724 0.46 -0.2
1,545,277 - 15092 mRNA_6724 0.47 +0.5
1,545,298 + 15092 mRNA_6724 0.48 +0.4
1,545,316 - 15092 mRNA_6724 0.49 +0.1
1,545,320 - 15092 mRNA_6724 0.49 -0.2
1,545,371 - 15092 mRNA_6724 0.51 -1.2
1,545,588 - 15092 mRNA_6724 0.60 +0.3
1,545,588 - 15092 mRNA_6724 0.60 -0.7
1,545,593 - 15092 mRNA_6724 0.60 +0.7
1,545,622 + 15092 mRNA_6724 0.62 -0.5
1,545,707 - 15092 mRNA_6724 0.65 -0.7
1,545,731 + 15092 mRNA_6724 0.66 +1.7
1,545,745 - 15092 mRNA_6724 0.67 +0.2
1,545,772 + 15092 mRNA_6724 0.68 +0.3
1,545,775 - 15092 mRNA_6724 0.68 +0.5
1,545,814 + 15092 mRNA_6724 0.70 +1.5
1,545,878 - 15092 mRNA_6724 0.72 -0.2
1,545,879 - 15092 mRNA_6724 0.72 -0.2
1,545,888 + 15092 mRNA_6724 0.73 -0.5
1,545,935 - 15092 mRNA_6724 0.75 -0.2
1,545,963 + 15092 mRNA_6724 0.76 -1.5
1,545,998 - 15092 mRNA_6724 0.77 -1.1
1,546,023 + 15092 mRNA_6724 0.78 +0.0
1,546,026 - 15092 mRNA_6724 0.79 -0.4
1,546,031 - 15092 mRNA_6724 0.79 +0.5
1,546,041 + 15092 mRNA_6724 0.79 +0.2
1,546,044 - 15092 mRNA_6724 0.79 +0.3
1,546,077 + 15092 mRNA_6724 0.81 +0.2
1,546,116 - 15092 mRNA_6724 0.82 +0.9
1,546,118 + 15092 mRNA_6724 0.82 -0.6
1,546,200 + 15092 mRNA_6724 0.86 -0.0
1,546,202 + 15092 mRNA_6724 0.86 -0.6
1,546,203 - 15092 mRNA_6724 0.86 +2.2
1,546,203 - 15092 mRNA_6724 0.86 -0.1
1,546,212 + 15092 mRNA_6724 0.86 -0.8
1,546,230 + 15092 mRNA_6724 0.87 -0.9
1,546,264 - 15092 mRNA_6724 0.89 +0.1
1,546,265 + 15092 mRNA_6724 0.89 +0.0
1,546,306 + +1.2
1,546,306 + +0.7
1,546,307 - +0.1
1,546,339 - -0.1
1,546,360 - -1.1
1,546,400 - -1.7
1,546,403 - +0.0
1,546,407 + -0.1
1,546,414 + -0.9
1,546,461 - -1.0
1,546,474 - +0.8
1,546,482 + -1.8
1,546,491 - +1.0
1,546,491 - -0.5
1,546,493 - -0.1
1,546,498 - +0.1
1,546,498 + +1.4
1,546,499 + +0.1
1,546,507 + -0.8
1,546,507 + +0.0
1,546,508 - -0.4
1,546,511 - -1.7
1,546,545 - +0.3
1,546,558 + -1.0
1,546,573 - +0.2
1,546,583 - -1.0
1,546,594 - -0.3
1,546,608 - +0.6
1,546,622 - +0.3
1,546,628 + -1.3
1,546,635 - +0.3
1,546,638 - -0.9
1,546,641 + -1.3
1,546,642 - -1.7
1,546,643 - +0.7
1,546,656 + +0.5
1,546,656 - -0.9
1,546,660 - +0.1
1,546,669 - -0.9
1,546,671 - -1.1
1,546,675 - +0.2
1,546,675 + -0.1
1,546,677 - -0.1
1,546,677 - +0.7
1,546,679 + -0.7
1,546,680 - -0.3
1,546,681 - -0.7
1,546,681 - +1.7
1,546,684 - -2.0
1,546,686 - -0.3
1,546,690 - -0.0
1,546,690 + +1.4
1,546,690 - -0.2
1,546,691 - -0.7
1,546,693 - -1.3
1,546,716 + -0.2
1,546,716 + -0.5
1,546,716 + -1.0
1,546,716 + -1.0
1,546,716 + +1.3
1,546,716 + +0.0
1,546,716 + +0.8
1,546,716 - +0.1
1,546,716 + -1.2
1,546,716 + -0.8
1,546,719 - +0.7
1,546,721 + -0.1
1,546,721 + -0.7
1,546,721 + -0.4
1,546,723 + +0.2
1,546,725 + -0.4
1,546,725 + -0.7
1,546,725 + +1.0
1,546,726 + -2.8
1,546,726 + -0.1
1,546,726 + +0.6
1,546,726 + +0.9
1,546,726 + -0.9
1,546,726 + -1.2
1,546,726 + -0.1
1,546,726 + -0.4
1,546,726 + +0.6
1,546,726 + -1.0
1,546,726 + +0.4
1,546,726 + +0.3
1,546,726 + -1.0
1,546,726 + -0.9
1,546,727 + +0.8
1,546,727 + -1.4
1,546,727 + +0.7
1,546,727 + +0.0
1,546,727 + -0.8
1,546,728 + -0.3
1,546,728 - -1.4
1,546,728 + +0.5
1,546,728 + -0.1
1,546,729 + +0.4
1,546,730 + +0.2
1,546,730 + -0.1
1,546,730 + -0.8
1,546,730 + +1.0
1,546,730 + -1.4
1,546,730 + -0.5
1,546,730 + -0.1
1,546,731 + +1.0
1,546,731 + +0.1
1,546,731 + -1.0
1,546,731 + -0.1
1,546,731 + -0.1
1,546,731 + +1.2
1,546,732 + -1.1
1,546,732 + -0.6
1,546,733 + +0.1
1,546,733 + +0.7
1,546,733 + +1.5
1,546,734 + -0.5
1,546,739 - -0.3
1,546,741 - -0.8
1,546,743 + -0.2
1,546,743 + -0.1
1,546,754 - +0.5

Or see this region's nucleotide sequence