Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6731

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15099 and 15100 are separated by 503 nucleotides mRNA_6731: 15099 - BLAST putative Ran-binding protein [Rhizoctonia solani 123E], at 15,699 to 18,601 15099 mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903 15100

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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14,788 - +0.3
14,802 + +0.2
14,898 - -0.1
14,918 - -0.1
15,094 + -0.6
15,118 - +0.6
15,294 + -0.1
15,324 + -0.7
15,506 - +0.5
15,599 + -0.9
15,752 - -2.8
15,753 + +1.4
15,845 + -0.4
15,845 + -1.3
15,919 + +1.0
16,071 - 15099 mRNA_6731 0.13 -0.1
16,115 + 15099 mRNA_6731 0.14 -1.1
16,119 - 15099 mRNA_6731 0.14 +0.3
16,160 - 15099 mRNA_6731 0.16 +0.3
16,167 + 15099 mRNA_6731 0.16 -0.5
16,339 + 15099 mRNA_6731 0.22 -0.5
16,433 - 15099 mRNA_6731 0.25 +0.5
16,638 - 15099 mRNA_6731 0.32 -0.4
16,656 + 15099 mRNA_6731 0.33 +0.0
16,742 + 15099 mRNA_6731 0.36 -0.4
16,750 - 15099 mRNA_6731 0.36 -0.2
16,750 + 15099 mRNA_6731 0.36 +0.7
16,766 + 15099 mRNA_6731 0.37 +0.0
16,896 + 15099 mRNA_6731 0.41 +0.1
17,013 + 15099 mRNA_6731 0.45 -1.1
17,038 + 15099 mRNA_6731 0.46 -1.2
17,067 + 15099 mRNA_6731 0.47 -0.9
17,162 + 15099 mRNA_6731 0.50 -0.8
17,356 + 15099 mRNA_6731 0.57 -1.7
17,590 + 15099 mRNA_6731 0.65 +0.1
17,661 - 15099 mRNA_6731 0.68 +0.6
17,977 + 15099 mRNA_6731 0.78 -0.1
18,184 + 15099 mRNA_6731 0.86 +0.2
18,552 - +1.2
18,970 - -0.6

Or see this region's nucleotide sequence