Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6738

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15105 and 15106 are separated by 90 nucleotides15106 and 15107 are separated by 253 nucleotides mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29,328 to 32,887 15105 mRNA_6738: 15106 - Hypothetical Protein, at 32,978 to 33,241 15106 mRNA_6739: 15107 - BLAST polysaccharide lyase family 14 protein [Mixia osm..., at 33,495 to 35,587 15107

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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31,986 - 15105 mRNA_6737 0.75 +0.0
32,059 - 15105 mRNA_6737 0.77 -0.7
32,076 + 15105 mRNA_6737 0.77 +0.9
32,236 + 15105 mRNA_6737 0.82 -0.1
32,282 + 15105 mRNA_6737 0.83 -0.1
32,507 - 15105 mRNA_6737 0.89 +1.5
32,608 + +0.8
32,639 + +1.7
32,639 + -1.7
32,642 - +0.6
32,642 - -0.3
32,677 - +1.7
32,687 + -0.4
32,687 + -0.0
32,737 - -0.0
32,738 + -0.6
32,777 + -0.4
32,839 - +0.4
33,105 - 15106 mRNA_6738 0.48 -1.1
33,228 - -1.0
33,402 + -0.2
33,536 - -0.2
33,559 - -0.1
33,944 + 15107 mRNA_6739 0.21 -0.3
34,016 - 15107 mRNA_6739 0.25 +0.8
34,117 + 15107 mRNA_6739 0.30 +0.7

Or see this region's nucleotide sequence