Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6759

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15126 and 15127 are separated by 393 nucleotides15127 and 15128 are separated by 341 nucleotides mRNA_6758: 15126 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 73,895 to 75,434 15126 mRNA_6759: 15127 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 75,828 to 77,290 15127 mRNA_6760: 15128 - Hypothetical Protein, at 77,632 to 78,666 15128

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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74,896 + 15126 mRNA_6758 0.65 -0.3
75,284 - +0.9
75,313 + +0.5
75,316 - -0.3
75,460 + +0.3
75,463 - +0.0
75,695 - +0.4
75,742 - +0.8
75,751 + -0.2
75,751 - -0.2
75,770 + -1.1
75,907 - -0.1
75,915 + +0.5
76,065 + 15127 mRNA_6759 0.16 -1.3
76,087 - 15127 mRNA_6759 0.18 -1.7
76,105 + 15127 mRNA_6759 0.19 -1.2
76,158 + 15127 mRNA_6759 0.23 -0.7
76,192 - 15127 mRNA_6759 0.25 +0.7
76,207 + 15127 mRNA_6759 0.26 -1.3
76,224 - 15127 mRNA_6759 0.27 -1.5
76,507 - 15127 mRNA_6759 0.46 -0.4
76,706 - 15127 mRNA_6759 0.60 +1.5
76,761 + 15127 mRNA_6759 0.64 +1.1
76,923 - 15127 mRNA_6759 0.75 -0.6
76,971 - 15127 mRNA_6759 0.78 +0.7
77,065 - 15127 mRNA_6759 0.85 +0.6
77,216 + -0.8
77,217 + +0.7
77,349 - -0.8
77,532 - -1.5
77,545 - -0.0
77,548 + -1.3
77,557 + -0.4
77,566 - -0.5
77,613 + +0.1
77,733 - -1.2
77,734 + +0.8

Or see this region's nucleotide sequence