Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6916

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15283 and 15284 are separated by 300 nucleotides15284 and 15285 are separated by 236 nucleotides mRNA_6915: 15283 - K01130 E3.1.6.1, aslA arylsulfatase, at 424,136 to 426,200 15283 mRNA_6916: 15284 - SUPERFAMILY--SSF52833, at 426,501 to 427,574 15284 mRNA_6917: 15285 - K04883 KCNAB2 potassium voltage-gated channel Shaker-related subfamily A, beta member 2, at 427,811 to 428,744 15285

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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425,750 - 15283 mRNA_6915 0.78 +1.6
425,803 + 15283 mRNA_6915 0.81 +0.4
426,132 - -1.0
426,379 - +0.2
426,424 - -0.4
426,602 + -1.0
426,764 - 15284 mRNA_6916 0.24 -0.0
426,841 - 15284 mRNA_6916 0.32 +0.3
427,018 + 15284 mRNA_6916 0.48 -1.3
427,277 - 15284 mRNA_6916 0.72 -0.2
427,324 - 15284 mRNA_6916 0.77 -0.7
427,542 - +0.5
427,738 - +1.8
428,363 - 15285 mRNA_6917 0.59 -0.7

Or see this region's nucleotide sequence