Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7007

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15374 and 15375 are separated by 741 nucleotides15375 and 15376 are separated by 369 nucleotides mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654,250 to 659,147 15374 mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659,889 to 660,691 15375 mRNA_7008: 15376 - Hypothetical Protein, at 661,061 to 661,645 15376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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658,925 - -0.2
658,937 - +0.7
658,939 + +0.5
659,067 - -0.4
659,079 + -1.7
659,234 + +0.8
659,235 - +1.3
659,374 - +0.3
659,388 - -0.4
659,493 + +0.3
659,506 - -0.9
659,519 - -0.6
659,534 + -0.3
659,539 - +1.0
659,540 + -0.6
659,548 + -0.0
659,564 - +0.6
659,579 - +0.9
659,579 - -0.7
659,584 + -0.8
659,709 - +0.1
659,736 - +0.0
659,841 + -1.0
659,857 + -2.5
660,001 - 15375 mRNA_7007 0.14 -0.2
660,132 + 15375 mRNA_7007 0.30 -1.3
660,310 + 15375 mRNA_7007 0.52 -0.6
660,416 - 15375 mRNA_7007 0.66 -0.5
660,459 - 15375 mRNA_7007 0.71 +0.7
660,591 + 15375 mRNA_7007 0.87 -0.2
660,613 - -0.1
660,631 + -0.9
660,728 - -0.1
660,729 - +0.2
660,736 - +0.5
660,741 - -0.9
660,741 - -0.0
660,743 - -0.1
660,752 - +1.2
660,753 - +0.2
660,757 + +0.7
660,757 + +0.4
660,758 - -0.3
660,764 - -0.2
660,765 - -2.0
660,773 + +0.1
660,780 - +0.1
660,783 - +0.0
660,785 + +0.1
660,789 - +1.9
660,804 + -0.5
660,808 - +0.0
660,814 + -0.4
660,824 - -0.7
660,829 + +0.2
660,835 + -1.2
660,842 - -0.1
660,843 + -0.5
660,847 + -0.3
660,851 + +1.3
660,910 + -0.0
660,919 - +0.0
660,923 - -1.4
660,936 + -0.6
660,949 + -1.4
660,960 + -1.1
660,982 + -0.3
661,131 - 15376 mRNA_7008 0.12 -1.0
661,280 + 15376 mRNA_7008 0.37 -0.3
661,283 + 15376 mRNA_7008 0.38 -1.0
661,285 - 15376 mRNA_7008 0.38 +0.2
661,304 - 15376 mRNA_7008 0.42 -0.1
661,381 - 15376 mRNA_7008 0.55 +0.4
661,500 + 15376 mRNA_7008 0.75 +1.0
661,622 + +0.7
661,647 + +0.6

Or see this region's nucleotide sequence