Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7040

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15408 and 15409 are separated by 436 nucleotides mRNA_7040: 15408 - Hypothetical Protein, at 733,097 to 733,346 15408 mRNA_7041: 15409 - KOG1577 Aldo/keto reductase family proteins, at 733,783 to 735,045 15409

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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732,136 - +0.9
732,140 - +2.2
732,262 + -0.2
732,570 + +0.3
732,697 - +1.0
732,703 + -0.3
732,714 - -1.6
732,716 - +0.0
732,723 - -0.2
732,725 + -0.1
732,808 + -0.6
732,993 - -0.3
733,013 - -1.1
733,125 - 15408 mRNA_7040 0.11 +0.3
733,137 - 15408 mRNA_7040 0.16 -0.7
733,145 + 15408 mRNA_7040 0.19 +0.3
733,154 - 15408 mRNA_7040 0.23 +1.9
733,279 + 15408 mRNA_7040 0.73 +0.1
733,281 - 15408 mRNA_7040 0.74 -1.1
733,289 + 15408 mRNA_7040 0.77 +0.5
733,309 + 15408 mRNA_7040 0.85 +0.3
733,316 - 15408 mRNA_7040 0.88 +0.6
733,318 + 15408 mRNA_7040 0.88 -1.0
733,321 + 15408 mRNA_7040 0.90 -2.3
733,325 + -0.1
733,325 - +0.3
733,326 - -0.2
733,327 - -0.4
733,328 + -0.0
733,332 + -1.3
733,340 + -2.3
733,344 - -0.4
733,351 - -1.4
733,356 + +0.2
733,356 + -1.0
733,367 - -1.3
733,393 - +0.7
733,470 - +0.2
733,476 + +0.4
733,477 + -0.4
733,488 + -0.5
733,488 + -0.6
733,490 + +0.5
733,490 + -0.6
733,491 - +0.3
733,493 - -0.2
733,493 - +1.6
733,494 + +0.1
733,496 + -0.2
733,505 - -2.0
733,547 - -0.5
733,548 - +0.1
733,552 - +1.3
733,566 - +1.3
733,567 - -0.3
733,567 + -1.2
733,568 - +0.7
733,568 - +0.3
733,570 - -0.0
733,571 + +0.3
733,722 - +0.2
733,733 + -0.7
733,751 + -0.1
733,885 + +1.3
734,184 - 15409 mRNA_7041 0.32 -2.3
734,188 + 15409 mRNA_7041 0.32 -0.4

Or see this region's nucleotide sequence