Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7069

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15436 and 15437 are separated by 159 nucleotides15437 and 15438 are separated by 657 nucleotides mRNA_7068: 15436 - K00167 BCKDHB, bkdA2 2-oxoisovalerate dehydrogenase E1 component beta subunit, at 804,244 to 806,337 15436 mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806,497 to 812,015 15437 mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812,673 to 814,209 15438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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805,533 - 15436 mRNA_7068 0.62 +0.8
805,636 + 15436 mRNA_7068 0.66 +0.3
805,952 - 15436 mRNA_7068 0.82 +0.0
806,083 - 15436 mRNA_7068 0.88 +0.5
806,100 + 15436 mRNA_7068 0.89 +0.4
806,227 - +1.6
806,526 + -1.5
806,680 - -0.4
806,892 - +1.4
806,996 - -0.5
807,111 - 15437 mRNA_7069 0.11 +0.6
807,155 - 15437 mRNA_7069 0.12 -0.8
807,402 + 15437 mRNA_7069 0.16 +0.6
807,600 - 15437 mRNA_7069 0.20 +0.8
807,601 + 15437 mRNA_7069 0.20 +0.3
807,601 + 15437 mRNA_7069 0.20 +1.0
807,610 + 15437 mRNA_7069 0.20 -1.0
807,879 - 15437 mRNA_7069 0.25 -0.8
808,173 + 15437 mRNA_7069 0.30 -0.5
808,530 + 15437 mRNA_7069 0.37 -0.1
808,533 - 15437 mRNA_7069 0.37 -0.8
808,540 + 15437 mRNA_7069 0.37 -0.1
808,579 + 15437 mRNA_7069 0.38 +1.2
808,674 + 15437 mRNA_7069 0.39 -0.4
808,741 + 15437 mRNA_7069 0.41 -0.1
808,858 + 15437 mRNA_7069 0.43 -0.2
808,990 - 15437 mRNA_7069 0.45 -0.6
809,186 - 15437 mRNA_7069 0.49 +0.6
809,361 - 15437 mRNA_7069 0.52 -0.5
809,747 - 15437 mRNA_7069 0.59 +0.5
809,789 + 15437 mRNA_7069 0.60 +0.1
809,796 - 15437 mRNA_7069 0.60 -0.9
809,892 - 15437 mRNA_7069 0.62 -0.0
810,092 - 15437 mRNA_7069 0.65 -0.3
810,389 + 15437 mRNA_7069 0.71 -0.8
810,502 + 15437 mRNA_7069 0.73 +0.0
810,639 + 15437 mRNA_7069 0.75 +0.5
810,650 - 15437 mRNA_7069 0.75 +0.2
810,665 + 15437 mRNA_7069 0.76 -0.1
810,668 + 15437 mRNA_7069 0.76 -0.6
810,766 - 15437 mRNA_7069 0.77 -0.4
810,769 + 15437 mRNA_7069 0.77 -1.1
810,777 + 15437 mRNA_7069 0.78 -0.6
810,787 - 15437 mRNA_7069 0.78 -0.2
810,790 + 15437 mRNA_7069 0.78 -1.3
810,804 - 15437 mRNA_7069 0.78 -0.0
810,808 - 15437 mRNA_7069 0.78 +0.4
810,808 + 15437 mRNA_7069 0.78 +0.2
811,993 + -0.0
812,128 - -0.4
812,131 + +0.5
812,141 - -1.1
812,150 + +0.5
812,192 - +0.1
812,226 - +0.2
812,226 - +0.5
812,248 + +0.6
812,253 + +0.2
812,254 + -1.2
812,258 - +0.0
812,261 + -3.2
812,281 + -0.0
812,286 - +1.1
812,294 - -0.7
812,318 - -0.1
812,323 - -0.1
812,324 + -0.5
812,339 - -0.0
812,377 - +0.4
812,402 + +0.2
812,405 - -0.1
812,406 - -0.5
812,415 + -0.2
812,416 - +0.3
812,416 + +0.4
812,424 - -1.0
812,424 + -0.2
812,426 - -0.3
812,449 - -0.2
812,463 - -0.9
812,466 + -0.0
812,469 + +0.6
812,485 - -0.6
812,489 + +0.9
812,490 + -1.7
812,608 - -0.1
812,612 - +0.6
812,628 + -0.5
812,779 + -0.5

Or see this region's nucleotide sequence