Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7076

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15444 and 15445 are separated by 169 nucleotides mRNA_7076: 15444 - K17413 MRPS35 small subunit ribosomal protein S35, at 825,955 to 826,915 15444 mRNA_7077: 15445 - K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase, at 827,085 to 831,280 15445

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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825,046 - -0.4
825,048 + -1.1
825,175 - -0.5
825,317 - -1.2
825,330 + -0.4
825,473 + +0.1
825,474 + +0.4
825,482 + -0.5
825,485 + +0.7
825,486 - +0.2
825,486 - -0.6
825,493 + +0.4
825,494 - +0.3
825,495 + -1.1
825,499 + +0.3
825,501 + +0.3
825,623 + +0.0
825,625 - -0.2
825,628 - +1.0
825,629 - -1.1
825,631 + -0.4
825,784 + +0.5
825,947 + +1.0
826,917 + -0.4
826,976 - -0.0
827,128 - -0.1
827,203 + -0.2
827,364 + +0.2
827,365 - -1.0
827,423 - -1.0
827,510 - 15445 mRNA_7077 0.10 +0.8
827,554 + 15445 mRNA_7077 0.11 -0.1
827,699 + 15445 mRNA_7077 0.15 +1.2

Or see this region's nucleotide sequence