Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7081

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15448 and 15449 are separated by 161 nucleotides15449 and 15450 are separated by 112 nucleotides mRNA_7080: 15448 - K12481 RBSN, ZFYVE20 rabenosyn-5, at 834,064 to 836,328 15448 mRNA_7081: 15449 - K00272 DDO D-aspartate oxidase, at 836,490 to 837,896 15449 mRNA_7082: 15450 - K20406 NPRL3 nitrogen permease regulator 3-like protein, at 838,009 to 840,569 15450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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835,613 + 15448 mRNA_7080 0.68 -0.6
836,047 - 15448 mRNA_7080 0.88 -0.3
836,218 - +0.5
836,506 + +1.5
836,517 + -0.5
836,542 - -0.6
836,565 - -1.1
836,664 - 15449 mRNA_7081 0.12 +0.9
836,666 - 15449 mRNA_7081 0.13 -0.8
836,813 - 15449 mRNA_7081 0.23 +0.1
836,970 - 15449 mRNA_7081 0.34 +0.6
837,515 + 15449 mRNA_7081 0.73 -0.0
837,670 - 15449 mRNA_7081 0.84 -0.4
837,831 - +0.1
837,838 + +0.9
837,966 - -2.2
837,967 - -0.0
837,982 + +0.4
837,992 - -1.3
838,007 - -0.4
838,008 + -0.2
838,015 + +0.2
838,137 + +0.3
838,279 - 15450 mRNA_7082 0.11 -1.1

Or see this region's nucleotide sequence