Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7111

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15478 and 15479 are separated by 280 nucleotides15479 and 15480 are separated by 399 nucleotides mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168 15478 mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908,449 to 909,688 15479 mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910,088 to 911,391 15480

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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907,823 - 15478 mRNA_7110 0.79 -1.3
907,973 - 15478 mRNA_7110 0.88 -0.2
908,138 + +0.9
908,240 + -0.1
908,244 + +1.3
908,269 - -0.6
908,988 - 15479 mRNA_7111 0.43 +0.0
909,154 - 15479 mRNA_7111 0.57 -0.3
909,438 + 15479 mRNA_7111 0.80 +1.4
909,592 + -2.1
909,596 + +0.0
909,730 - -0.0
909,751 - -0.0
909,878 - -0.3
909,883 + -0.8
909,885 + -0.8
909,886 - -0.7
909,892 - +0.3
909,897 + -0.5
909,903 + -0.6
909,905 - +0.3
909,906 - -0.9
910,018 + +0.0
910,020 + -0.6
910,029 - -0.8
910,029 + -0.3
910,046 - -0.9
910,068 + -0.5
910,174 - -0.2
910,440 + 15480 mRNA_7112 0.27 -0.2
910,452 - 15480 mRNA_7112 0.28 +0.1
910,535 + 15480 mRNA_7112 0.34 +0.3

Or see this region's nucleotide sequence