Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7115

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15482 and 15483 are separated by 637 nucleotides15483 and 15484 are separated by 513 nucleotides mRNA_7114: 15482 - K00383 GSR, gor glutathione reductase (NADPH), at 913,071 to 914,998 15482 mRNA_7115: 15483 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 915,636 to 918,075 15483 mRNA_7116: 15484 - K04393 CDC42 cell division control protein 42, at 918,589 to 919,535 15484

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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915,355 + -0.2
915,364 - -0.3
915,367 - -0.8
915,367 + +0.1
915,371 + -0.6
915,371 + +1.3
915,372 - -0.7
915,382 + -0.2
915,387 + -0.9
915,404 + -0.3
915,492 - -1.0
915,647 + +0.8
915,672 - -1.5
915,794 - +0.5
916,001 + 15483 mRNA_7115 0.15 +1.7
916,242 - 15483 mRNA_7115 0.25 +0.3
916,350 - 15483 mRNA_7115 0.29 -1.6
916,442 + 15483 mRNA_7115 0.33 -1.4
916,682 - 15483 mRNA_7115 0.43 +0.2
917,000 + 15483 mRNA_7115 0.56 -0.0
917,602 + 15483 mRNA_7115 0.81 -0.4
917,728 + 15483 mRNA_7115 0.86 +0.4
917,863 - +0.7
917,880 + +0.5
917,999 - -0.6
918,120 - -0.7
918,144 + -0.9
918,147 - -0.5
918,153 - -0.3
918,153 + +0.3
918,153 + +0.2
918,166 - +0.5
918,186 - -2.3
918,192 + -0.5
918,305 - +0.4
918,445 + -0.5
918,736 + 15484 mRNA_7116 0.16 -0.1
918,863 - 15484 mRNA_7116 0.29 -0.5

Or see this region's nucleotide sequence