Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7143

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15510 and 15511 are separated by 525 nucleotides15511 and 15512 are separated by 921 nucleotides mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979,628 to 983,826 15510 mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984,352 to 987,514 15511 mRNA_7144: 15512 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 988,436 to 990,722 15512

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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983,415 + -0.2
983,546 + -0.2
983,695 - -0.3
983,707 - -0.1
983,717 - -0.3
984,006 - -0.3
984,154 + -0.7
984,577 - +1.1
984,578 - +0.2
984,608 + -0.1
984,624 + -0.3
985,013 - 15511 mRNA_7143 0.21 -0.1
985,097 + 15511 mRNA_7143 0.24 +1.4
985,390 + 15511 mRNA_7143 0.33 -0.7
985,494 - 15511 mRNA_7143 0.36 -1.5
985,598 - 15511 mRNA_7143 0.39 -0.1
985,598 + 15511 mRNA_7143 0.39 -0.3
985,706 + 15511 mRNA_7143 0.43 -0.3
985,841 + 15511 mRNA_7143 0.47 -0.2
985,994 - 15511 mRNA_7143 0.52 +0.2
986,148 + 15511 mRNA_7143 0.57 +0.6
986,154 + 15511 mRNA_7143 0.57 +0.0
986,156 - 15511 mRNA_7143 0.57 +0.5
986,189 + 15511 mRNA_7143 0.58 +0.8
986,565 + 15511 mRNA_7143 0.70 -0.3
986,754 - 15511 mRNA_7143 0.76 +0.9
986,845 - 15511 mRNA_7143 0.79 +1.6
987,024 - 15511 mRNA_7143 0.84 -0.5
987,041 - 15511 mRNA_7143 0.85 -0.9
987,139 - 15511 mRNA_7143 0.88 -1.3
987,321 - -0.2
987,332 - -0.5
987,370 - +0.0
987,791 - +0.7
987,800 + +1.5
987,922 + -0.8
988,061 - +2.3
988,070 + -0.2
988,083 - -1.1
988,194 - +0.8
988,202 + +0.3
988,211 - -1.0
988,219 + -0.0

Or see this region's nucleotide sequence