Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7149

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15516 and 15517 are separated by 134 nucleotides15517 and 15518 are separated by 220 nucleotides mRNA_7148: 15516 - KOG2246 Galactosyltransferases, at 995,963 to 997,965 15516 mRNA_7149: 15517 - K12733 PPIL1 peptidyl-prolyl cis-trans isomerase-like 1, at 998,100 to 998,920 15517 mRNA_7150: 15518 - K01874 MARS, metG methionyl-tRNA synthetase, at 999,141 to 1,001,312 15518

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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997,920 + -0.3
998,061 + -0.5
998,061 + +0.8
998,062 - -0.8
998,242 + 15517 mRNA_7149 0.17 -0.4
998,309 - 15517 mRNA_7149 0.25 -1.1
998,664 + 15517 mRNA_7149 0.69 +0.1
998,681 + 15517 mRNA_7149 0.71 +1.6
998,770 + 15517 mRNA_7149 0.82 +0.1
998,795 + 15517 mRNA_7149 0.85 -0.4
998,801 - 15517 mRNA_7149 0.85 -0.4
998,812 - 15517 mRNA_7149 0.87 +0.4
998,941 + -0.2
998,956 + +0.4
999,083 - +0.5
999,087 - +0.0
999,129 - +0.3

Or see this region's nucleotide sequence