Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7160

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15527 and 15528 are separated by 242 nucleotides15528 and 15529 are separated by 270 nucleotides mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,017,040 to 1,019,381 15527 mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,019,624 to 1,022,322 15528 mRNA_7161: 15529 - Hypothetical Protein, at 1,022,593 to 1,024,140 15529

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,018,676 + 15527 mRNA_7159 0.70 -0.6
1,018,973 + 15527 mRNA_7159 0.83 +1.2
1,018,975 - 15527 mRNA_7159 0.83 -0.7
1,018,990 - 15527 mRNA_7159 0.83 +0.0
1,019,116 + 15527 mRNA_7159 0.89 +0.6
1,019,158 + -0.9
1,019,176 + -1.4
1,019,702 - -0.0
1,019,707 + +0.2
1,019,738 - -0.9
1,019,812 + -1.4
1,019,886 + -0.1
1,019,928 + 15528 mRNA_7160 0.11 -1.1
1,019,964 + 15528 mRNA_7160 0.13 +0.1
1,020,341 - 15528 mRNA_7160 0.27 +1.2
1,020,592 - 15528 mRNA_7160 0.36 -0.6
1,020,715 + 15528 mRNA_7160 0.40 +0.1
1,020,735 - 15528 mRNA_7160 0.41 +0.9
1,020,982 - 15528 mRNA_7160 0.50 -0.4
1,021,128 - 15528 mRNA_7160 0.56 -0.3
1,021,288 - 15528 mRNA_7160 0.62 -2.7
1,021,300 - 15528 mRNA_7160 0.62 -0.3
1,021,455 - 15528 mRNA_7160 0.68 -1.1
1,021,969 + 15528 mRNA_7160 0.87 -0.1
1,022,150 - -0.5
1,022,173 - +0.4
1,022,469 + -1.7
1,022,933 - 15529 mRNA_7161 0.22 -0.3
1,023,034 + 15529 mRNA_7161 0.28 -0.3
1,023,056 + 15529 mRNA_7161 0.30 -0.7
1,023,214 + 15529 mRNA_7161 0.40 -1.5

Or see this region's nucleotide sequence