Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7195

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15562 and 15563 are separated by 189 nucleotides15563 and 15564 are separated by 334 nucleotides mRNA_7194: 15562 - K12831 SF3B4, SAP49 splicing factor 3B subunit 4, at 1,093,562 to 1,094,787 15562 mRNA_7195: 15563 - KOG0519 Sensory transduction histidine kinase, at 1,094,977 to 1,103,696 15563 mRNA_7196: 15564 - KOG3329 RAN guanine nucleotide release factor, at 1,104,031 to 1,104,798 15564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,094,552 + 15562 mRNA_7194 0.81 -0.8
1,094,998 + -0.4
1,095,224 - +1.0
1,095,393 + -1.7
1,095,622 - +0.1
1,095,759 - +0.8
1,095,845 - +0.8
1,095,916 - 15563 mRNA_7195 0.11 -0.0
1,095,992 + 15563 mRNA_7195 0.12 -0.1
1,096,155 - 15563 mRNA_7195 0.14 -0.4
1,096,337 + 15563 mRNA_7195 0.16 +0.5
1,096,383 - 15563 mRNA_7195 0.16 +0.3
1,096,925 - 15563 mRNA_7195 0.22 +0.4
1,096,964 - 15563 mRNA_7195 0.23 -1.0
1,097,196 + 15563 mRNA_7195 0.25 +0.3
1,097,219 - 15563 mRNA_7195 0.26 -0.3
1,097,471 - 15563 mRNA_7195 0.29 +1.2
1,097,946 - 15563 mRNA_7195 0.34 +0.0
1,098,047 + 15563 mRNA_7195 0.35 -0.3
1,098,105 + 15563 mRNA_7195 0.36 +0.9
1,098,285 - 15563 mRNA_7195 0.38 -0.0
1,098,637 - 15563 mRNA_7195 0.42 +0.2
1,098,799 + 15563 mRNA_7195 0.44 +0.2
1,098,845 - 15563 mRNA_7195 0.44 -0.2
1,098,957 + 15563 mRNA_7195 0.46 -1.3
1,099,008 + 15563 mRNA_7195 0.46 +0.4
1,099,009 + 15563 mRNA_7195 0.46 -0.3
1,099,115 - 15563 mRNA_7195 0.47 +2.0
1,099,133 + 15563 mRNA_7195 0.48 -0.4
1,099,143 + 15563 mRNA_7195 0.48 +0.0
1,099,331 - 15563 mRNA_7195 0.50 +0.2
1,099,451 - 15563 mRNA_7195 0.51 -0.7
1,099,511 + 15563 mRNA_7195 0.52 +0.0
1,099,511 - 15563 mRNA_7195 0.52 -0.5
1,099,527 + 15563 mRNA_7195 0.52 +0.3
1,099,779 + 15563 mRNA_7195 0.55 +0.7
1,099,876 - 15563 mRNA_7195 0.56 -0.4
1,099,899 + 15563 mRNA_7195 0.56 +0.8
1,099,968 - 15563 mRNA_7195 0.57 +0.4
1,100,371 - 15563 mRNA_7195 0.62 -0.2
1,100,432 - 15563 mRNA_7195 0.63 +0.6
1,100,589 - 15563 mRNA_7195 0.64 -0.4
1,100,604 - 15563 mRNA_7195 0.65 +0.0
1,100,692 - 15563 mRNA_7195 0.66 +0.0
1,100,830 + 15563 mRNA_7195 0.67 +0.3
1,101,203 + 15563 mRNA_7195 0.71 -0.9
1,101,206 + 15563 mRNA_7195 0.71 +0.3
1,102,444 + 15563 mRNA_7195 0.86 +0.9
1,102,765 - 15563 mRNA_7195 0.89 -0.2
1,102,777 - 15563 mRNA_7195 0.89 +0.5
1,102,789 + 15563 mRNA_7195 0.90 -0.6
1,102,790 - 15563 mRNA_7195 0.90 +0.1
1,102,926 - +1.4
1,102,934 - +0.2
1,103,214 + +0.6
1,103,238 + -0.5
1,103,378 - -1.2
1,103,475 - -0.0
1,103,480 + +0.2
1,103,491 - -0.6
1,103,503 - -1.4
1,103,505 + -0.1
1,103,507 - -0.7
1,103,520 - +1.1
1,103,526 + +0.2
1,103,529 + -1.1
1,103,655 - +1.2
1,103,657 + -0.6
1,103,657 - -0.3
1,103,668 - +1.3
1,103,752 + -0.5
1,103,795 - +0.6
1,103,795 - +0.8
1,103,804 - -0.3
1,103,807 - -0.2
1,103,993 + -0.6

Or see this region's nucleotide sequence