Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7334

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15701 and 15702 are separated by 78 nucleotides15702 and 15703 are separated by 221 nucleotides15703 and 15704 are separated by 4 nucleotides mRNA_7333: 15701 - SUPERFAMILY--SSF52047, at 28,402 to 29,421 15701 mRNA_7334: 15702 - HMMPfam-RTA1 like protein-PF04479, at 29,500 to 31,086 15702 mRNA_7335: 15703 - Hypothetical Protein, at 31,308 to 31,781 15703 mRNA_7336: 15704 - Hypothetical Protein, at 31,786 to 32,791 15704

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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28,715 - 15701 mRNA_7333 0.31 -0.2
28,900 + 15701 mRNA_7333 0.49 -1.9
28,901 - 15701 mRNA_7333 0.49 -0.8
29,051 + 15701 mRNA_7333 0.64 +0.3
29,314 - 15701 mRNA_7333 0.89 -0.8
29,371 - +0.7
29,516 - -0.3
29,620 - +0.2
29,620 + -0.3
29,664 - 15702 mRNA_7334 0.10 -0.3
29,702 - 15702 mRNA_7334 0.13 +0.2
29,913 - 15702 mRNA_7334 0.26 -1.1
29,970 + 15702 mRNA_7334 0.30 -0.1
30,341 - 15702 mRNA_7334 0.53 -0.6
30,512 - 15702 mRNA_7334 0.64 -1.2
30,819 + 15702 mRNA_7334 0.83 +1.0
30,820 - 15702 mRNA_7334 0.83 +0.6
30,846 + 15702 mRNA_7334 0.85 +0.3
30,902 - 15702 mRNA_7334 0.88 -0.7
30,920 - 15702 mRNA_7334 0.89 +0.3
30,947 - -0.8
31,065 - +0.0
31,237 + +0.0
31,239 + -2.5
31,259 + -0.2
31,263 + -0.8
31,271 + -0.7
31,285 - -0.2
31,291 - +1.6
31,293 - +0.7
31,299 - -0.4
31,301 - -1.0
31,303 - -0.8
31,315 - +0.5
31,326 - +0.4
31,330 - +1.2
31,340 + -0.5
31,341 - -0.2
31,342 - -0.7
31,372 - 15703 mRNA_7335 0.14 -0.7
31,383 + 15703 mRNA_7335 0.16 +0.9
31,385 - 15703 mRNA_7335 0.16 -0.9
31,389 - 15703 mRNA_7335 0.17 +0.1
31,397 + 15703 mRNA_7335 0.19 +0.2
31,410 + 15703 mRNA_7335 0.22 +2.3
31,434 + 15703 mRNA_7335 0.27 -1.0
31,458 + 15703 mRNA_7335 0.32 -0.0
31,532 - 15703 mRNA_7335 0.47 +0.2

Or see this region's nucleotide sequence