Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7365

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15732 and 15733 are separated by 95 nucleotides15733 and 15734 are separated by 251 nucleotides mRNA_7364: 15732 - KOG1337 N-methyltransferase, at 98,801 to 102,847 15732 mRNA_7365: 15733 - Hypothetical Protein, at 102,943 to 104,194 15733 mRNA_7366: 15734 - SUPERFAMILY--SSF57701, at 104,446 to 105,512 15734

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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102,148 + 15732 mRNA_7364 0.83 -1.0
102,238 + 15732 mRNA_7364 0.85 -0.5
102,400 - 15732 mRNA_7364 0.89 +0.4
102,555 + -0.8
102,650 + -0.4
102,677 + +1.2
102,832 + -0.4
102,834 + -0.7
102,961 - -0.9
102,975 + -0.2
103,130 + 15733 mRNA_7365 0.15 +0.4
103,263 + 15733 mRNA_7365 0.26 -0.9
103,447 - 15733 mRNA_7365 0.40 -0.2
103,574 - 15733 mRNA_7365 0.50 +0.6
103,580 + 15733 mRNA_7365 0.51 -1.1
103,858 + 15733 mRNA_7365 0.73 -0.2
104,182 + +0.4
104,346 + -1.7
104,461 - -1.1
104,583 + 15734 mRNA_7366 0.13 +0.2
104,749 + 15734 mRNA_7366 0.28 -1.3
104,875 - 15734 mRNA_7366 0.40 +0.1
104,968 + 15734 mRNA_7366 0.49 -0.2
105,039 + 15734 mRNA_7366 0.56 +0.2
105,136 - 15734 mRNA_7366 0.65 -0.1
105,190 - 15734 mRNA_7366 0.70 -0.7
105,193 + 15734 mRNA_7366 0.70 +0.8

Or see this region's nucleotide sequence