Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7428

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15796 and 15797 are separated by 52 nucleotides mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251,137 to 252,658 15796 mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252,711 to 255,477 15797

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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250,193 + -0.2
250,239 - -0.3
250,361 + -1.2
250,414 + +0.1
250,504 - -0.7
250,528 - -0.5
250,587 + +0.5
250,694 + -0.7
250,710 + +0.9
250,745 - -0.4
250,782 + +0.0
250,806 - -0.1
250,838 + +0.3
250,838 - -1.1
250,854 + -1.2
250,957 - -0.4
250,958 - +0.2
250,963 + -1.0
250,964 + -0.2
250,973 + -2.2
250,983 + +1.3
251,103 + +1.4
251,291 - 15796 mRNA_7428 0.10 +0.3
252,155 - 15796 mRNA_7428 0.67 -2.1
252,169 + 15796 mRNA_7428 0.68 -1.3
252,622 + -0.3
252,895 + +0.0
253,018 - 15797 mRNA_7429 0.11 -0.6
253,050 - 15797 mRNA_7429 0.12 +0.1
253,513 - 15797 mRNA_7429 0.29 -1.7

Or see this region's nucleotide sequence