Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7474

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15841 and 15842 are separated by 276 nucleotides mRNA_7473: 15841 - Hypothetical Protein, at 367,495 to 368,778 15841 mRNA_7474: 15842 - HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756, at 369,055 to 372,143 15842

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
368,180 + 15841 mRNA_7473 0.53 -0.3
368,360 + 15841 mRNA_7473 0.67 -0.5
368,481 + 15841 mRNA_7473 0.77 +0.4
368,497 + 15841 mRNA_7473 0.78 -0.3
368,498 + 15841 mRNA_7473 0.78 -0.3
368,513 - 15841 mRNA_7473 0.79 +3.3
368,626 + 15841 mRNA_7473 0.88 -0.1
368,626 + 15841 mRNA_7473 0.88 -0.1
368,644 + 15841 mRNA_7473 0.89 -0.1
368,749 - -0.4
368,758 + -0.6
368,765 + -0.1
368,769 - -1.3
368,774 + -0.3
368,776 + -0.3
368,778 - -1.5
368,780 - -0.1
368,786 - -0.3
368,800 - +0.1
368,801 + +0.3
368,805 + +1.2
368,806 + -0.9
368,825 + -0.5
368,912 - -1.0
368,938 + +0.4
368,942 - +0.3
368,944 - -1.2
368,944 - -0.9
368,947 + -0.1
368,947 - +0.1
368,947 + -0.1
368,953 + -0.7
368,956 - -1.6
368,956 - +0.7
368,958 - -0.0
368,963 + -2.3
368,965 - -0.4
368,965 - -0.5
368,967 - -1.3
368,971 - -0.2
368,975 - -1.0
368,977 + +1.1
368,980 - -0.2
368,981 - -0.4
368,982 - +0.0
368,983 + +0.1
368,985 - +0.2
368,986 - -0.9
368,986 - -0.0
368,997 + +0.2
369,002 - -0.5
369,006 - +0.1
369,011 - -0.9
369,035 + -0.4
369,068 - -0.3
369,071 - -0.0
369,074 + +1.1
369,077 - +0.1
369,078 - -0.4
369,079 - +0.4
369,081 - +0.2
369,085 + -0.8
369,094 + +0.9
369,100 + -0.6
369,102 - -0.7
369,102 - +1.6
369,104 + +0.1
369,107 + +0.5
369,108 - -0.2
369,111 + -0.2
369,111 + -0.1
369,111 + -1.6
369,116 - -0.2
369,117 - +0.8
369,127 - -0.0
369,129 - -1.7
369,132 - -0.1
369,139 + +0.0
369,139 + -0.2
369,152 - -0.2
369,217 + +1.0
369,237 + +0.8
369,241 - -0.5
369,262 - -1.1
369,263 + -0.1
369,263 + -1.8
369,269 + -1.0
369,344 + -0.3
369,402 + 15842 mRNA_7474 0.11 +0.8
369,412 + 15842 mRNA_7474 0.12 -0.8
369,433 - 15842 mRNA_7474 0.12 -1.0
369,448 - 15842 mRNA_7474 0.13 -0.8
369,472 - 15842 mRNA_7474 0.13 -0.1
369,507 + 15842 mRNA_7474 0.15 -1.5
369,564 - 15842 mRNA_7474 0.16 -0.1
369,577 + 15842 mRNA_7474 0.17 +0.2
369,586 + 15842 mRNA_7474 0.17 +0.4
369,601 - 15842 mRNA_7474 0.18 -0.8
369,728 + 15842 mRNA_7474 0.22 -0.3
369,731 + 15842 mRNA_7474 0.22 -1.4
369,853 + 15842 mRNA_7474 0.26 -0.9
369,853 - 15842 mRNA_7474 0.26 +1.2
370,557 - 15842 mRNA_7474 0.49 -0.9
371,020 - 15842 mRNA_7474 0.64 -1.2
371,027 + 15842 mRNA_7474 0.64 -1.7
371,186 - 15842 mRNA_7474 0.69 -0.8
371,320 + 15842 mRNA_7474 0.73 -0.3
371,333 + 15842 mRNA_7474 0.74 -0.3
371,339 + 15842 mRNA_7474 0.74 -0.6
371,473 + 15842 mRNA_7474 0.78 -0.6
371,480 + 15842 mRNA_7474 0.79 -0.9
371,613 - 15842 mRNA_7474 0.83 -0.6
371,633 + 15842 mRNA_7474 0.83 -0.1
371,639 + 15842 mRNA_7474 0.84 -1.4
371,760 + 15842 mRNA_7474 0.88 -0.3
372,089 + -0.2
372,210 - -0.1
372,218 + +0.4
372,227 + +0.6
372,240 + -0.9
372,246 + +0.4
372,250 + +0.4
372,256 + +0.4
372,262 - +0.2
372,266 + -0.1
372,276 + +0.0
372,397 + +1.7
372,409 + -1.2
372,415 + -1.1
372,550 - -0.5
372,586 + +0.4
372,701 - -0.2
372,702 + +0.1
372,705 - -0.4
372,708 + -0.4
372,842 - -2.0
372,849 + -1.5
373,005 - -0.4
373,110 - -1.3
373,112 - -0.4

Or see this region's nucleotide sequence