Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7523

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15890 and 15891 are separated by 366 nucleotides15891 and 15892 are separated by 246 nucleotides mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490,428 to 491,714 15890 mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492,081 to 493,296 15891 mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493,543 to 495,211 15892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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491,085 - 15890 mRNA_7522 0.51 -0.8
491,425 - 15890 mRNA_7522 0.77 -0.4
491,543 - 15890 mRNA_7522 0.87 -0.4
491,573 + 15890 mRNA_7522 0.89 -1.5
491,646 - -0.5
491,647 + -0.0
491,760 - -0.8
491,849 - -2.2
491,986 + +0.1
492,005 - -1.8
492,044 + +0.0
492,053 + +0.9
492,063 + -0.2
492,303 - 15891 mRNA_7523 0.18 -0.6
492,418 + 15891 mRNA_7523 0.28 -0.1
492,452 - 15891 mRNA_7523 0.31 +0.1
492,904 + 15891 mRNA_7523 0.68 +0.3
492,919 + 15891 mRNA_7523 0.69 +1.6
492,921 + 15891 mRNA_7523 0.69 -0.1
493,059 + 15891 mRNA_7523 0.80 -0.5
493,066 + 15891 mRNA_7523 0.81 +0.2
493,344 - +0.2
493,349 - +0.3
493,361 + -0.0
493,383 - -0.1
493,498 + -0.2
493,524 - -1.1
493,526 + -0.4
493,540 - -0.9
493,656 + +0.0
493,823 - 15892 mRNA_7524 0.17 +0.2
493,933 + 15892 mRNA_7524 0.23 +0.2
493,985 - 15892 mRNA_7524 0.26 +0.4

Or see this region's nucleotide sequence