Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7549

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15917 and 15918 are separated by 151 nucleotides mRNA_7549: 15917 - Hypothetical Protein, at 541,229 to 541,762 15917 mRNA_7550: 15918 - ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SUPERFAMILY--SSF54427, at 541,914 to 542,318 15918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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540,234 + +0.0
540,236 + -0.6
540,239 - +1.1
540,246 - -1.0
540,248 + +0.8
540,251 - -0.2
540,252 + -0.7
540,256 - -0.0
540,264 + -0.2
540,266 - +0.7
540,269 - +0.6
540,270 + -0.1
540,274 - -0.4
540,283 - -0.5
540,286 + -0.7
540,288 + -1.8
540,289 + +0.2
540,295 - +0.1
540,297 - -1.4
540,390 + +0.6
540,406 - -0.3
540,411 - +1.3
540,432 + -0.2
540,441 + -0.6
540,446 - +0.3
540,448 - +0.1
540,451 + +0.3
540,565 - -1.6
540,576 - +0.1
540,590 + -0.1
540,700 - +1.3
540,886 - -0.3
541,132 - +2.2
541,339 + 15917 mRNA_7549 0.21 -0.8
541,749 - -0.1

Or see this region's nucleotide sequence