Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7593

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15960 and 15961 are separated by 192 nucleotides15961 and 15962 are separated by 290 nucleotides mRNA_7592: 15960 - Hypothetical Protein, at 636,503 to 637,419 15960 mRNA_7593: 15961 - K15631 ABA3 molybdenum cofactor sulfurtransferase, at 637,612 to 640,700 15961 mRNA_7594: 15962 - K00106 XDH xanthine dehydrogenase/oxidase, at 640,991 to 646,168 15962

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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636,766 + 15960 mRNA_7592 0.29 -0.6
637,336 - -0.4
637,527 - -0.2
637,588 - -1.5
637,787 - +0.7
638,183 - 15961 mRNA_7593 0.18 +1.2
638,205 + 15961 mRNA_7593 0.19 -0.7
638,499 - 15961 mRNA_7593 0.29 +0.6
638,884 - 15961 mRNA_7593 0.41 +0.7
639,433 - 15961 mRNA_7593 0.59 -2.3
639,737 - 15961 mRNA_7593 0.69 -0.1
639,785 + 15961 mRNA_7593 0.70 +0.1
639,879 - 15961 mRNA_7593 0.73 +0.2
639,926 + 15961 mRNA_7593 0.75 -0.7
640,053 - 15961 mRNA_7593 0.79 -1.8
640,080 + 15961 mRNA_7593 0.80 +0.0
640,260 - 15961 mRNA_7593 0.86 -1.0
640,341 - 15961 mRNA_7593 0.88 +0.6
640,341 - 15961 mRNA_7593 0.88 +0.4
640,346 - 15961 mRNA_7593 0.89 -0.2
640,372 + 15961 mRNA_7593 0.89 -1.7
640,643 - -1.7
640,813 - -0.0
640,820 + -0.7
640,828 - +0.3
640,836 - +0.1
640,836 + +0.5
640,958 - -0.3
640,968 + -0.1
640,969 + -1.0
640,972 - -0.5
640,976 - +0.2
640,977 + -0.1
640,980 - -2.5
641,081 - +0.9
641,252 - -0.9
641,279 - -0.1
641,362 - -1.0
641,419 + +0.3
641,524 + 15962 mRNA_7594 0.10 -1.1
641,548 - 15962 mRNA_7594 0.11 -0.3
641,681 - 15962 mRNA_7594 0.13 -0.2

Or see this region's nucleotide sequence