Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7599

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15966 and 15967 are separated by 272 nucleotides15967 and 15968 are separated by 300 nucleotides mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257 15966 mRNA_7599: 15967 - K01900 LSC2 succinyl-CoA synthetase beta subunit, at 652,530 to 654,489 15967 mRNA_7600: 15968 - K00010 iolG myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 654,790 to 656,500 15968

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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651,612 - 15966 mRNA_7598 0.72 -1.5
651,757 + 15966 mRNA_7598 0.79 -1.0
651,873 - 15966 mRNA_7598 0.84 -1.5
651,910 + 15966 mRNA_7598 0.85 -1.2
651,911 - 15966 mRNA_7598 0.85 +0.3
652,050 + +0.8
652,060 + -0.2
652,490 - -0.3
654,553 + -0.1
654,662 - +0.4
654,812 - +0.1
654,818 - -0.4
654,818 - -0.3
654,884 - +0.4
654,993 - 15968 mRNA_7600 0.12 -0.2
655,126 + 15968 mRNA_7600 0.20 +0.1
655,266 + 15968 mRNA_7600 0.28 -1.1
655,415 - 15968 mRNA_7600 0.37 +0.5

Or see this region's nucleotide sequence