Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7664

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16032 and 16033 are separated by 207 nucleotides mRNA_7664: 16032 - K07904 RAB11A Ras-related protein Rab-11A, at 794,964 to 796,238 16032 mRNA_7665: 16033 - K13119 FAM50, XAP5 protein FAM50, at 796,446 to 798,090 16033

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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793,968 - -0.5
793,977 - -1.8
793,994 + -0.2
794,005 + +0.1
794,006 - -0.1
794,008 - +0.0
794,009 + -0.2
794,034 + +0.3
794,035 + +1.1
794,037 + -0.9
794,053 + -0.1
794,058 + -0.7
794,071 - +0.6
794,074 + +0.1
794,077 - +1.8
794,078 + +0.1
794,081 + -0.4
794,082 + -0.7
794,093 - -1.3
794,096 - +0.7
794,098 - +0.4
794,104 + -0.3
794,105 - -0.1
794,115 + -0.5
794,117 + +0.5
794,122 - +1.3
794,122 - -0.4
794,123 - -0.4
794,127 - -0.5
794,130 + -0.3
794,134 + -0.4
794,135 - +0.5
794,136 - +0.8
794,138 + +0.0
794,141 + +0.7
794,152 - -0.2
794,155 + -1.1
794,161 + -0.3
794,162 - +0.6
794,164 - -0.4
794,164 - +0.1
794,165 - -1.1
794,167 - -0.4
794,168 + +0.1
794,174 + +0.1
794,175 + -0.1
794,177 - -1.0
794,177 + -0.1
794,179 - -0.5
794,180 - -0.5
794,180 - -0.0
794,182 + +0.3
794,184 + -0.9
794,185 + +0.6
794,185 - -0.5
794,186 + -0.6
794,187 - +0.4
794,187 - +1.2
794,202 - -0.5
794,203 + +1.5
794,203 + -0.5
794,203 - +0.7
794,204 + -2.1
794,206 + -0.8
794,209 + +0.2
794,210 - -0.4
794,223 - -0.5
794,227 - +0.4
794,227 + -0.5
794,229 + -0.2
794,230 - -0.2
794,233 + -0.2
794,233 - -1.7
794,236 - -1.1
794,237 + -0.2
794,238 + -1.2
794,240 - -0.2
794,245 - +0.7
794,245 - +1.2
794,248 + -1.1
794,248 - -0.6
794,252 - +0.6
794,253 - +0.3
794,259 - +0.3
794,259 + -1.9
794,261 + -1.2
794,262 + +0.1
794,265 + +0.2
794,267 - -0.5
794,278 - -1.2
794,281 - -0.4
794,283 + -0.0
794,292 + -2.4
794,372 + +0.3
794,396 + -0.4
794,418 + -0.2
794,422 + -1.1
794,427 + -0.4
794,447 + +0.7
794,453 - +0.3
794,459 + -0.1
794,496 - -0.5
794,517 - +2.3
794,521 - -0.8
794,525 + +0.1
794,529 + +0.5
794,542 - +0.8
794,555 + -0.8
794,556 + -0.4
794,558 + -0.2
794,561 - -0.0
794,563 + -0.7
794,568 + -0.4
794,575 + -0.5
794,576 - +0.3
794,578 - +0.1
794,596 + +0.7
794,597 + +0.3
794,620 + +0.0
794,624 - -0.0
794,689 + -0.2
794,697 - -0.3
794,697 - -0.3
794,703 - +0.7
794,703 + -0.4
794,715 - +0.1
794,722 - -0.6
794,727 - -1.0
794,732 - -0.6
794,737 - +0.6
794,747 + -0.0
794,751 - +0.2
794,761 + +0.2
794,766 + -1.6
794,769 + -0.3
794,771 + -0.9
794,888 + +0.5
794,891 + +0.6
794,959 - -2.3
795,574 - 16032 mRNA_7664 0.48 +0.7
796,342 + -0.2
796,352 - -2.7
796,358 - -0.1
796,359 + -0.0
796,359 - +1.7
796,367 - -0.6
796,376 + +0.0

Or see this region's nucleotide sequence