Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7673

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16040 and 16041 are separated by 317 nucleotides16041 and 16042 are separated by 414 nucleotides mRNA_7672: 16040 - Hypothetical Protein, at 808,491 to 811,190 16040 mRNA_7673: 16041 - K14778 DDX49, DBP8 ATP-dependent RNA helicase DDX49/DBP8, at 811,508 to 813,410 16041 mRNA_7674: 16042 - SUPERFAMILY--SSF48371, at 813,825 to 816,287 16042

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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810,687 + 16040 mRNA_7672 0.81 +0.4
810,690 - 16040 mRNA_7672 0.81 +0.1
810,696 - 16040 mRNA_7672 0.82 +0.6
810,832 - 16040 mRNA_7672 0.87 -0.1
811,025 + +0.6
811,076 + +0.1
811,085 - +0.1
811,138 + -0.2
811,272 - +0.1
811,272 - -0.8
811,458 - -0.9
813,459 - +0.6

Or see this region's nucleotide sequence