Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7681

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16048 and 16049 are separated by 217 nucleotides16049 and 16050 are separated by 244 nucleotides mRNA_7680: 16048 - K11992 ACOT8, PTE acyl-CoA thioesterase 8, at 824,116 to 826,082 16048 mRNA_7681: 16049 - Hypothetical Protein, at 826,300 to 827,705 16049 mRNA_7682: 16050 - Hypothetical Protein, at 827,950 to 829,213 16050

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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825,331 + 16048 mRNA_7680 0.62 +0.4
825,332 + 16048 mRNA_7680 0.62 -0.3
825,560 - 16048 mRNA_7680 0.73 -0.1
825,647 + 16048 mRNA_7680 0.78 +1.0
825,900 - +0.6
826,098 - +0.3
826,240 + -1.7
826,344 + -1.0
826,347 - +1.8
826,444 + 16049 mRNA_7681 0.10 -0.7
826,509 - 16049 mRNA_7681 0.15 +0.8
827,060 + 16049 mRNA_7681 0.54 +0.4
827,130 - 16049 mRNA_7681 0.59 -0.0
827,672 - +0.3
827,730 + +0.1
827,800 - -1.1
827,907 - -0.9
828,245 + 16050 mRNA_7682 0.23 -0.9
828,287 + 16050 mRNA_7682 0.27 +0.7
828,386 + 16050 mRNA_7682 0.34 -1.1
828,405 + 16050 mRNA_7682 0.36 +0.8
828,435 + 16050 mRNA_7682 0.38 +0.7

Or see this region's nucleotide sequence