Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7702

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16069 and 16070 are separated by 446 nucleotides16070 and 16071 are separated by 335 nucleotides mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877,198 to 880,311 16069 mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880,758 to 882,745 16070 mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883,081 to 887,724 16071

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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879,785 + 16069 mRNA_7701 0.83 -0.3
879,915 - 16069 mRNA_7701 0.87 -1.1
879,915 - 16069 mRNA_7701 0.87 -0.2
879,927 + 16069 mRNA_7701 0.88 +0.4
879,935 + 16069 mRNA_7701 0.88 +0.1
880,200 + -0.0
880,204 + +0.1
880,206 + +0.4
880,217 - -0.1
880,367 - +0.9
880,376 + -0.2
880,463 - -0.2
880,502 + -1.4
880,507 - +0.9
880,515 - +0.2
880,641 - -0.7
880,678 + -0.7
880,822 + -0.4
880,857 + -2.2
880,948 - -2.0
881,101 - 16070 mRNA_7702 0.17 -0.8
881,119 - 16070 mRNA_7702 0.18 -0.2
881,120 + 16070 mRNA_7702 0.18 -0.2
881,223 - 16070 mRNA_7702 0.23 +0.1
881,253 - 16070 mRNA_7702 0.25 +0.9
881,411 - 16070 mRNA_7702 0.33 +1.0
881,420 - 16070 mRNA_7702 0.33 -0.3
881,565 - 16070 mRNA_7702 0.41 -1.9
881,740 - 16070 mRNA_7702 0.49 -0.2
882,144 + 16070 mRNA_7702 0.70 +1.2
882,226 + 16070 mRNA_7702 0.74 -1.4
882,439 + 16070 mRNA_7702 0.85 +1.5
882,700 + -1.1
882,894 + -0.1
882,992 - +1.2
882,997 - -0.4
883,017 - -0.2

Or see this region's nucleotide sequence