Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7719

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16086 and 16087 are separated by 319 nucleotides16087 and 16088 are separated by 83 nucleotides mRNA_7718: 16086 - K08516 YKT6 synaptobrevin homolog YKT6, at 920,015 to 921,107 16086 mRNA_7719: 16087 - Hypothetical Protein, at 921,427 to 923,879 16087 mRNA_7720: 16088 - K03177 truB, PUS4, TRUB1 tRNA pseudouridine55 synthase, at 923,963 to 925,405 16088

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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921,156 + -0.5
921,161 + -0.6
921,163 - +0.1
921,188 + +1.1
921,317 - +0.4
921,361 - -0.2
921,441 - -0.5
921,463 + +1.0
921,484 + -0.3
921,615 + -0.7
921,713 + 16087 mRNA_7719 0.12 -0.7
921,754 + 16087 mRNA_7719 0.13 +1.4
921,924 + 16087 mRNA_7719 0.20 +0.4
921,934 - 16087 mRNA_7719 0.21 -0.5
921,943 - 16087 mRNA_7719 0.21 -1.1
922,069 + 16087 mRNA_7719 0.26 -0.9
922,086 + 16087 mRNA_7719 0.27 -0.7
922,199 - 16087 mRNA_7719 0.31 +0.0
922,208 + 16087 mRNA_7719 0.32 -0.6
922,221 - 16087 mRNA_7719 0.32 -2.3
922,242 + 16087 mRNA_7719 0.33 -1.6
922,358 + 16087 mRNA_7719 0.38 -0.4
922,499 - 16087 mRNA_7719 0.44 -0.2
922,504 + 16087 mRNA_7719 0.44 -0.6
922,622 - 16087 mRNA_7719 0.49 +0.3
922,759 + 16087 mRNA_7719 0.54 +0.1
922,771 + 16087 mRNA_7719 0.55 -0.6
922,773 - 16087 mRNA_7719 0.55 -3.0
922,796 - 16087 mRNA_7719 0.56 -0.1
922,802 + 16087 mRNA_7719 0.56 -1.2
922,975 + 16087 mRNA_7719 0.63 +1.8
923,540 - 16087 mRNA_7719 0.86 -2.3
923,541 + 16087 mRNA_7719 0.86 +0.3
923,544 - 16087 mRNA_7719 0.86 +0.4
923,551 - 16087 mRNA_7719 0.87 +0.3
923,554 + 16087 mRNA_7719 0.87 +0.4
923,821 - -0.6
923,832 + +0.5
923,864 + -0.0
923,980 + +0.4
924,382 - 16088 mRNA_7720 0.29 -1.6
924,393 - 16088 mRNA_7720 0.30 +0.1
924,571 + 16088 mRNA_7720 0.42 -0.3
924,668 - 16088 mRNA_7720 0.49 -1.0
924,678 + 16088 mRNA_7720 0.50 +0.0
924,716 - 16088 mRNA_7720 0.52 -0.3
924,846 - 16088 mRNA_7720 0.61 +0.8
924,869 - 16088 mRNA_7720 0.63 +2.0

Or see this region's nucleotide sequence